A recombinant adeno-associated virus (aav) having an aav capsid and packaged therein a heterologous nucleic acid which expresses two functional antibody constructs in a cell is described. Also described are antibodies comprising a heavy chain and a light chain from a heterologous antibody. In one embodiment, the antibodies are co-expressed from a vector containing: a first expression cassette which encodes at least a first open reading frame (ORF) for a first immunoglobulin under the control of regulatory control sequences which direct expression thereof; and a second expression cassette which comprises a second ORF, a linker, and a third ORF under the control of regulatory control sequences which direct expression thereof, wherein the second and third ORF for a second and third immunoglobulin construct. The vector co-expressing these two antibody constructs is in one embodiment an aav, in which the 5′ and 3′ ITRs flank the expression cassettes and regulatory sequences.
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1. A method of delivering at least two functional antibodies to a subject, said method comprising administering a recombinant adeno-associated virus (aav) having an aav capsid and packaged therein a heterologous nucleic acid which expresses at least two functional monospecific antibodies in a cell, and wherein the recombinant aav comprises:
a 5′ aav inverted terminal repeat (ITR);
a first expression cassette which encodes a first immunoglobulin chain under the control of regulatory control sequences which direct expression thereof;
a second expression cassette which encodes a second immunoglobulin chain, a linker, and a third immunoglobulin chain under the control of regulatory control sequences which direct expression thereof; and
a 3′ aav ITR, and
wherein the encoded immunoglobulin chains form the at least two functional monospecific antibodies and wherein the at least two expressed monospecific antibodies have different specificities.
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This is a continuation of U.S. patent application Ser. No. 15/310,555, filed Nov. 11, 2016, which is a national stage application under 35 USC 371 of PCT/US2015/030533, filed May 13, 2015, now expired, which claims the benefit under 35 USC 119(e) of U.S. Provisional Patent Application No. 61/992,649, filed May 13, 2014. Each of these applications is hereby incorporated by reference in its entirety.
This invention was made with government support under grant number ARO No. 64047-LS-DRP awarded by Defense Advanced Research Projects Agency (DARPA). The government has certain rights in the invention.
Applicant hereby incorporates by reference the Sequence Listing material filed in electronic form herewith. This file is labeled “14-7032PCT_Seq Listing_ST25.txt” and dated May 13, 2015 with a size of 220 KB.
Monoclonal antibodies have been proven as effective therapeutics for cancer and other diseases. Current antibody therapy often involves repeat administration and long term treatment regimens, which are associated with a number of disadvantages, such as inconsistent serum levels and limited duration of efficacy per administration such that frequent re-administration is required and high cost. The use of antibodies as diagnostic tools and therapeutic modalities has found increasing use in recent years. The first FDA-approved monoclonal antibody for cancer treatment, Rituxan® (Rituximab) was approved in 1997 for the treatment of patients with non-Hodgkin's lymphoma and soon thereafter in 1995, Herceptin®, a humanized monoclonal antibody for treatment of patients with metastatic breast cancer, was approved. Numerous antibody-based therapies that are in various stages of clinical development are showing promise. Given the success of various monoclonal antibody therapies, it has been suggested the next generation of biopharmaceuticals will involve cocktails, i.e., mixtures, of antibodies.
One limitation to the widespread clinical application of antibody technology is that typically large amounts of antibody are required for therapeutic efficacy and the costs associated with production are significant. Chinese Hamster Ovarian (CHO) cells, SP20 and NSO2 myeloma cells are the most commonly used mammalian cell lines for commercial scale production of glycosylated human proteins such as antibodies. The yields obtained from mammalian cell line production typically range from 50-250 mg/L for 5-7 day culture in a batch fermenter or 300-1000 mg/L in 7-12 days in fed batch fermenters.
Adeno associated virus (AAV) is a desirable vector for delivering therapeutic genes due to its safety profile and capability of long term gene expression in vivo. Recombinant AAV vectors (rAAV) have been previously used to express single chain and full length antibodies in vivo. Due to the limited transgene packaging capacity of AAV, it has been a technical challenge to have a tightly regulated system to express heavy and light chains of an antibody using a single AAV vector in order to generate full length antibodies.
There remains a need in the art for delivering two antibodies in a single composition for therapeutic use.
A recombinant adeno-associated virus (AAV) having an AAV capsid which has packaged therein a heterologous nucleic acid which expresses two functional antibodies in a cell is provided herein. In one embodiment, the recombinant AAV contains an ORF encoding an immunoglobulin light chain, a second ORF encoding a first immunoglobulin heavy chain and a third ORF encoding a second heavy chain, whereby the expressed functional antibody constructs have two different heavy chains with different specificities which share a light chain. In one embodiment, the two antibodies with different specificities are co-expressed, with a third, bispecific antibody having the specificities of the two monospecific antibodies.
In one embodiment, the rAAV comprises: a 5′ AAV inverted terminal repeat (ITR); a first expression cassette which encodes at least a first open reading frame (ORF) for a first immunoglobulin under the control of regulatory control sequences which direct expression thereof; a second expression cassette which comprises a second ORF, a linker, and a third ORF under the control of regulatory control sequences which direct expression thereof, wherein the second and third ORF encode for a second and third immunoglobulin construct; and a 3′ AAV ITR.
A pharmaceutical composition is provided which comprises a recombinant AAV which expresses at least two functional antibody constructs and pharmaceutically acceptable carrier. In one embodiment, the at least two functional antibodies have different specificities. Optionally, also co-expressed is a bispecific antibody.
A composition comprising at least two functional antibodies having different specificities is provided, wherein each of the antibodies has the same light chain and a different heavy chain. The light chain is from a different source than the heavy chain for one or both of the antibodies. In one embodiment, two functional monospecific antibodies and a bifunctional antibody are expressed. In one embodiment, the ratio of antibodies is about 25:about 50:about 25, homodimeric:bispecific:homodimeric.
A method of delivering two functional antibodies to a subject is provided which comprises administering a recombinant AAV to the subject.
Still other aspects and advantages of the invention will be readily apparent from the following detailed description of the invention.
A vector is provided herein which delivers at least two functional antibodies by co-expressing two different heavy chains and single light chain which when expressed in a cell form two functional antibodies with different specificities, i.e., which recognize different antigens (or ligands). A third functional antibody may also be expressed and is bispecific, having the heavy chain of each of the two monospecific antibodies. Typically, the third antibody is expressed at a lower level than the two monospecific antibodies. A vector may be used in vivo for efficient production of compositions which will utilize the at least two antibodies or an antibody-producing host cell may be engineered to contain the expression cassettes for the two, different heavy chains and a single type of light chain. Thus, the invention also encompasses a host cell expressing a mixture of two monospecific antibodies, wherein each antibody has a distinct specificity but contains the same light chain, and a third antibody which is bispecific. In one desired embodiment, the vector is designed to deliver the three different antibody constructs in a subject to which the vector is administered.
In one embodiment, the vector is a recombinant AAV which has packaged within an AAV capsid a nucleic acid molecule containing sequences encoding two different heavy chains and a single light chain, which when co-expressed forms two functional monospecific antibodies, i.e., first antibody with a first heavy chain and the light chain and a second antibody with the second heavy chain and the light chain, and a third antibody that has one of each of the heavy chains and the same light chain to make a bispecific antibody.
A “functional antibody” may be an antibody or immunoglobulin which binds to a selected target (e.g., an antigen on a cancer cell or a pathogen, such as a virus, bacteria, or parasite) with sufficient binding affinity to effect a desired physiologic result, which may be protective (e.g., passive immunization) or therapeutic.
The AAV vector provided herein may contain 1, 2, or 3 open reading frames (ORF) for up to ten immunoglobulin domains. As used herein, an “immunoglobulin domain” refers to a domain of an antibody heavy chain or light chain as defined with reference to a conventional, full-length antibody. More particularly, a full-length antibody contains a heavy (H) chain polypeptide which contains four domains: one N-terminal variable (VH) region and three C-terminal constant (CHL CH2 and CH3) regions and a light (L) chain polypeptide which contains two domains: one N-terminal variable (VL) region and one C-terminal constant (CL) region. An Fc region contains two domains (CH2-CH3). A Fab region may contain one constant and one variable domain for each the heavy and light chains.
In an AAV vector described herein, two full-length heavy chain polypeptides may be expressed (4 domains each) and a light chain polypeptide (two domains). In one desirable embodiment, the two heavy chain polypeptides have different specificities, i.e., are directed to different targets. Thus, the vectors are useful alone or in combination, for expressing mixtures of antibodies.
As used herein, “different specificities” indicates that the referenced immunoglobulin constructs (e.g., a full-length antibody, a heavy chain, or other construct capable of binding a specific target) bind to a different target site. Suitably, in a dual expressed antibody construct, the two specificities are non-overlapping and/or non-interfering, and may optionally enhance each other. Two antibody (immunoglobulin) constructs as described herein confer different specificity by binding to a different target site on the same pathogen or target site (e.g., a virus protein or tumor). Such different target antigens may be different strains of the same viral type (e.g., two different influenza strains), or two different antigens (e.g., an antiviral and anti-cancer, two different anti-cancer constructs, amongst others). For example, a first heavy chain polypeptide may combine with the light chain to form an antibody construct having a first specificity, the second heavy chain polypeptide may combine with the light chain to form a second antibody construct having a second specificity, and the first and second heavy chain may combine with the light chain to form a bispecific antibody. The antibodies may optionally both be directed to different antigenic sites (epitopes) on a single target (e.g., different target sites on a selected viral, bacterial, fungal or parasite pathogen) or to different targets. For example, heavy chains from the two antibodies may be directed to the influenza virus, and may be co-expressed to form two monospecific antibodies (e.g., heavy chains from influenza viruses FI6, CR8033 and C05 may be selected) and expressed with a selected light chain, and a bispecific antibody. Examples of suitable influenza antibody and other anti-airborne pathogen antibody constructs and a method for delivering same are described in, e.g., WO 2012/145572A1. The antibodies may also be directed to different targets (e.g., an anti-viral antibody, including chronic viral infections, viral infections associated with cancers, or different anti-neoplastic cell surface proteins or other targets. Examples of suitable viral targets include the influenza hemagglutinin protein or other viral proteins, human immunodeficiency virus (HIV), human papilloma virus (HPV), Epstein-Barr virus, human herpes virus, respiratory syncytial virus, amongst others. Thus, the invention is particularly well suited for use in therapeutics and passive prophylaxis for which combinations of antibodies are desired.
The term “immunoglobulin” is used herein to include antibodies, and functional fragments thereof. Antibodies may exist in a variety of forms including, for example, polyclonal antibodies, monoclonal antibodies, camelized single domain antibodies, intracellular antibodies (“intrabodies”), recombinant antibodies, multispecific antibody (bispecific), antibody fragments, such as, Fv, Fab, F(ab)2, F(ab)3, Fab′, Fab′-SH, F(ab′)2, single chain variable fragment antibodies (scFv), tandem/bis-scFv, Fc, pFc′, scFvFc (or scFv-Fc), disulfide Fv (dsfv), bispecific antibodies (bc-scFv) such as BiTE antibodies; camelid antibodies, resurfaced antibodies, humanized antibodies, fully human antibodies, single-domain antibody (sdAb, also known as NANOBODY®), chimeric antibodies, chimeric antibodies comprising at least one human constant region, and the like. “Antibody fragment” refers to at least a portion of the variable region of the immunoglobulin that binds to its target, e.g., the tumor cell. In one embodiment, immunoglobulin is an IgG. However, other types of immunoglobulin may be selected. In another embodiment, the IgG subtype selected is an IgG1. However, other isotypes may be selected. Further, any of the IgG1 allotypes may be selected.
The term “heterologous” when used with reference to a protein or a nucleic acid indicates that the protein or the nucleic acid comprises two or more sequences or subsequences which are not found in the same relationship to each other in nature. For instance, the nucleic acid is typically recombinantly produced, having two or more sequences from unrelated genes arranged to make a new functional nucleic acid. For example, in one embodiment, the nucleic acid has a promoter from one gene arranged to direct the expression of a coding sequence from a different gene. Thus, with reference to the coding sequence, the promoter is heterologous. The term “heterologous light chain” is a light chain containing a variable domain and/or constant domain from an antibody which has a different target specificity from the specificity of the heavy chain.
The two or more ORF(s) carried by the nucleic acid molecule packaged within the vector may be expressed from two expression cassettes, one or both of which may be bicistronic. Because the expression cassettes contain heavy chains from two different antibodies, it is desirable to introduce sequence variation between the two heavy chain sequences to minimize the possibility of homologous recombination. Typically there is sufficient variation between the variable domains of the two antibodies (VH-Ab1 and VH-Ab2). However, it is desirable to ensure there is sufficient coding sequence variation between the constant regions of the first antibody (Ab1) and the second antibody (Ab2), most preferably in each of the CH1, CH2, and CH3 regions. For example, in one embodiment, the heavy chain constant regions of a first antibody may have the sequence of nt 1 to 705 of SEQ ID NO: 1 (which encodes amino acids 1-233 of SEQ ID NO:2) or a sequence which is about 95% to about 99% identical thereto without any introducing any amino acid changes. In one embodiment, variation in the sequence of these regions is introduced in the form of synonymous codons (i.e., variations of the nucleic acid sequence are introduced without any changes at the amino acid level). For example, the second heavy chain may have constant regions which are at least 15%, at least about 25%, at least about 35%, divergent (i.e., about 65% to about 85% identical) over CH1, CH2 and/or CH3.
Once the target and immunoglobulin are selected, the coding sequences for the selected immunoglobulin (e.g., heavy and/or light chain(s)) may be obtained and/or synthesized. Methods for sequencing a nucleic acid (e.g., RNA and DNA) are known to those of skill in the art. Once the sequence of a nucleic acid is known, the amino acid can be deduced and subsequently, there are web-based and commercially available computer programs, as well as service based companies which back translate the amino acids sequences to nucleic acid coding sequences. See, e.g., backtranseq by EMBOSS, www.ebi.ac.uk/Tools/st/; Gene Infinity (www.geneinfinity org/sms/sms_backtranslation.html); ExPasy (www.expasy.org/tools/). In one embodiment, the RNA and/or cDNA coding sequences are designed for optimal expression in human cells. Methods for synthesizing nucleic acids are known to those of skill in the art and may be utilized for all, or portions, of the nucleic acid constructs described herein.
Codon-optimized coding regions can be designed by various different methods. This optimization may be performed using methods which are available on-line (e.g., GeneArt), published methods, or a company which provides codon optimizing services, e.g., as DNA2.0 (Menlo Park, Calif.). One codon optimizing algorithm is described, e.g., in WO 2015/012924, which is incorporated by reference herein. See also, e.g., US Patent Publication No. 2014/0032186 and US Patent Publication No. 2006/0136184. Suitably, the entire length of the open reading frame (ORF) for the product is modified. However, in some embodiments, only a fragment of the ORF may be altered. By using one of these methods, one can apply the frequencies to any given polypeptide sequence, and produce a nucleic acid fragment of a codon-optimized coding region which encodes the polypeptide.
A number of options are available for performing the actual changes to the codons or for synthesizing the codon-optimized coding regions designed as described herein. Such modifications or synthesis can be performed using standard and routine molecular biological manipulations well known to those of ordinary skill in the art. In one approach, a series of complementary oligonucleotide pairs of 80-90 nucleotides each in length and spanning the length of the desired sequence are synthesized by standard methods. These oligonucleotide pairs are synthesized such that upon annealing, they form double stranded fragments of 80-90 base pairs, containing cohesive ends, e.g., each oligonucleotide in the pair is synthesized to extend 3, 4, 5, 6, 7, 8, 9, 10, or more bases beyond the region that is complementary to the other oligonucleotide in the pair. The single-stranded ends of each pair of oligonucleotides are designed to anneal with the single-stranded end of another pair of oligonucleotides. The oligonucleotide pairs are allowed to anneal, and approximately five to six of these double-stranded fragments are then allowed to anneal together via the cohesive single stranded ends, and then they ligated together and cloned into a standard bacterial cloning vector, for example, a TOPO® vector available from Invitrogen Corporation, Carlsbad, Calif. The construct is then sequenced by standard methods. Several of these constructs consisting of 5 to 6 fragments of 80 to 90 base pair fragments ligated together, i.e., fragments of about 500 base pairs, are prepared, such that the entire desired sequence is represented in a series of plasmid constructs. The inserts of these plasmids are then cut with appropriate restriction enzymes and ligated together to form the final construct. The final construct is then cloned into a standard bacterial cloning vector, and sequenced. Additional methods would be immediately apparent to the skilled artisan. In addition, gene synthesis is readily available commercially.
Optionally, amino acid substitutions may be introduced into a heavy chain constant region in order to increase sequence diversity between the two antibody heavy chains and/or for another purpose. Methods and computer programs for preparing such alignments are available and well known to those of skill in the art. Substitutions may also be written as (amino acid identified by single letter code)-position #-(amino acid identified by single letter code) whereby the first amino acid is the substituted amino acid and the second amino acid is the substituting amino acid at the specified position. The terms “substitution” and “substitution of an amino acid” and “amino acid substitution” as used herein refer to a replacement of an amino acid in an amino acid sequence with another one, wherein the latter is different from the replaced amino acid. Methods for replacing an amino acid are well known to the skilled in the art and include, but are not limited to, mutations of the nucleotide sequence encoding the amino acid sequence. Methods of making amino acid substitutions in IgG are described, e.g., for WO 2013/046704, which is incorporated by reference for its discussion of amino acid modification techniques.
The term “amino acid substitution” and its synonyms described above are intended to encompass modification of an amino acid sequence by replacement of an amino acid with another, substituting amino acid. The substitution may be a conservative substitution. The term conservative, in referring to two amino acids, is intended to mean that the amino acids share a common property recognized by one of skill in the art. The term non-conservative, in referring to two amino acids, is intended to mean that the amino acids which have differences in at least one property recognized by one of skill in the art. For example, such properties may include amino acids having hydrophobic nonacidic side chains, amino acids having hydrophobic side chains (which may be further differentiated as acidic or nonacidic), amino acids having aliphatic hydrophobic side chains, amino acids having aromatic hydrophobic side chains, amino acids with polar neutral side chains, amino acids with electrically charged side chains, amino acids with electrically charged acidic side chains, and amino acids with electrically charged basic side chains. Both naturally occurring and non-naturally occurring amino acids are known in the art and may be used as substituting amino acids in embodiments. Thus, a conservative amino acid substitution may involve changing a first amino acid having a hydrophobic side chain with a different amino acid having a hydrophobic side chain; whereas a non-conservative amino acid substitution may involve changing a first amino acid with an acidic hydrophobic side chain with a different amino acid having a different side chain, e.g., a basic hydrophobic side chain or a hydrophilic side chain Still other conservative or non-conservative changes can be determined by one of skill in the art. In still other embodiments, the substitution at a given position will be to an amino acid, or one of a group of amino acids, that will be apparent to one of skill in the art in order to accomplish an objective identified herein.
In order to express a selected immunoglobulin domain, a nucleic acid molecule may be designed which contains codons which have been selected for optimal expression of the immunoglobulin polypeptides in a selected mammalian species, e.g., humans. Further, the nucleic acid molecule may include a heterologous leader sequence for each heavy chain and light chain of the selected antibody, which encodes the wild-type or a mutated IL-2 signal leader peptide fused upstream of the heavy and light chain polypeptides composed of the variable and constant regions. However, another heterologous leader sequence may be substituted for one or both of the IL-2 signal peptide. Signal/leader peptides may be the same or different for each the heavy chain and light chain immunoglobulin constructs. These may be signal sequences which are natively found in an immunoglobulin (e.g., IgG), or may be from a heterologous source. Such heterologous sources may be a cytokine (e.g., IL-2, IL12, IL18, or the like), insulin, albumin, β-glucuronidase, alkaline protease or the fibronectin secretory signal peptides, amongst others.
As used herein, an “expression cassette” refers to a nucleic acid sequence which comprises at least a first open reading frame (ORF) and optionally a second ORF. An ORF may contain two, three, or four antibody domains. For example, the ORF may contain a full-length heavy chain. Alternatively, an ORF may contain one or two antibody domains. For example, the ORF may contain a heavy chain variable domain and a single heavy chain constant domain. In another example, the ORF may contain a light chain variable and a light chain constant region. Thus, an expression cassette may be designed to be bicistronic, i.e., to contain regulatory sequences which direct expression of the ORFs thereon from shared regulatory sequences. In this instance, the two ORFs are typically separated by a linker. Suitable linkers, such as an internal ribozyme binding site (IRES) and/or a furin-2a self-cleaving peptide linker (F2a), [see, e.g., Radcliffe and Mitrophanous, Gene Therapy (2004), 11, 1673-1674] are known in the art. Suitably, the ORF are operably linked to regulatory control sequences which direct expression in a target cell. Such regulatory control sequences may include a polyA, a promoter, and an enhancer. In order to facilitate co-expression from an AAV vector, at least one of the enhancer and/or polyA sequence may be shared by the first and second expression cassettes.
In one embodiment, the rAAV has packaged within the selected AAV capsid, a nucleic acid molecule comprising: a 5′ ITR, a first expression cassette, a bidirectional enhancer, and a second expression cassette, where the bidirectional enhancer separates the first and second expression cassettes, and a 3′ ITR.
In another embodiment, the rAAV has packaged within the selected AAV capsid, a nucleic acid molecule comprising: a 5′ ITR, a first expression cassette, a polyA which functions bidirectionally, and a second expression cassette, where the bidirectional polyA separates and functions for both the first and the second expression cassettes, and a 3′ ITR.
Optionally, the expression configuration exemplified in
Suitable regulatory control sequences may be selected and obtained from a variety of sources. In one embodiment, a minimal promoter and/or a minimal polyA may be utilized to conserve size.
As used herein, the term “minimal promoter” means a short DNA sequence comprised of a TATA-box and other sequences that serve to specify the site of transcription initiation, to which regulatory elements are added for control of expression. In one embodiment, a promoter refers to a nucleotide sequence that includes a minimal promoter plus regulatory elements that is capable of controlling the expression of a coding sequence or functional RNA. This type of promoter sequence consists of proximal and more distal upstream elements, the latter elements often referred to as enhancers. In one embodiment, the minimal promoter is a Cytomegalovirus (CMV) minimal promoter. In another embodiment, the minimal promoter is derived from human CMV (hCMV) such as the hCMV immediate early promoter derived minimal promoter (see, US 20140127749, and Gossen and Bujard (Proc. Natl. Acad. Sci. USA, 1992, 89: 5547-5551), which are incorporated herein by reference). In another embodiment, the minimal promoter is derived from a viral source such as, for example: SV40 early or late promoters, cytomegalovirus (CMV) immediate early promoters, or Rous Sarcoma Virus (RSV) early promoters; or from eukaryotic cell promoters, for example, beta actin promoter (Ng, Nuc. Acid Res. 17:601-615, 1989; Quitsche et al., J. Biol. Chem. 264:9539-9545, 1989), GADPH promoter (Alexander, M. C. et al., Proc. Nat. Acad. Sci. USA 85:5092-5096, 1988, Ercolani, L. et al., J. Biol. Chem. 263:15335-15341, 1988), TK-1 (thymidine kinase) promoter, HSP (heat shock protein) promoters, UbB or UbC promoter, PGK, Efl-alpha promoter or any eukaryotic promoter containing a TATA box (US Published Application No. 2014/0094392). In another embodiment, the minimal promoter includes a mini-promoter, such as the CLDNS mini-promoter described in US Published Application No. 2014/0065666. In another embodiment, the minimal promoter is the Thymidine Kinase (TK) promoter. In one embodiment, the minimal promoter is tissue specific, such as one of the muscle-cell specific promoters, minimal TnISlow promoter, a minimal TnIFast promoter or a muscle creatine kinase promoter (US Published Application No. 2012/0282695). Each of these documents is incorporated herein by reference.
In one embodiment, the polyadenylation (poly(A)) signal is a minimal poly(A) signal, i.e., the minimum sequence required for efficient polyadenylation. In one embodiment, the minimal poly(A) is a synthetic poly(A), such as that described in Levitt et al, Genes Dev., 1989 July, 3(7):1019-25; and Xia et al, Nat Biotechnol. 2002 October; 20(10):1006-10. Epub 2002 Sep. 16. In another embodiment, the poly(A) is derived from the rabbit beta-globin poly(A). In one embodiment, the polyA acts bidirectionally (An et al, 2006, PNAS, 103(49): 18662-18667). In one embodiment, the poly(A) is derived from the SV40 early poly A signal sequence. Each of these documents is incorporated herein by reference.
As described herein, in one embodiment, a single enhancer, or the same enhancer, may regulate the transcription of multiple heterologous genes in the plasmid construct. Various enhancers suitable for use in the invention are known in the art and include, for example, the CMV early enhancer, Hoxc8 enhancer, nPE1 and nPE2. Additional enhancers useful herein are described in Andersson et al, Nature, 2014 March, 507(7493):455-61, which is incorporated herein by reference. Still other enhancer elements may include, e.g., an apolipoprotein enhancer, a zebrafish enhancer, a GFAP enhancer element, and tissue specific enhancers such as described in WO 2013/1555222, woodchuck hepatitis post-transcriptional regulatory element. Additionally, or alternatively, other, e.g., the hybrid human cytomegalovirus (HCMV)-immediate early (IE)-PDGR promoter or other promoter-enhancer elements may be selected. To enhance expression the other elements can be introns (like promega intron or chimeric chicken globin-human immunoglobulin intron). Other promoters and enhancers useful herein can be found in the Mammalian Promoter/Enhancer Database found at promoter.cdb.riken.jp/.
The constructs described herein may further contain other expression control or regulatory sequences such as, e.g., include appropriate transcription initiation, termination, promoter and enhancer sequences; efficient RNA processing signals such as splicing and polyadenylation (polyA) signals; sequences that stabilize cytoplasmic mRNA; sequences that enhance translation efficiency (i.e., Kozak consensus sequence); sequences that enhance protein stability; and when desired, sequences that enhance secretion of the encoded product. A promoter may be selected from amongst a constitutive promoter, a tissue-specific promoter, a cell-specific promoter, a promoter responsive to physiologic cues, or an regulatable promoter [see, e.g., WO 2011/126868 and WO 2013/049492].
These control sequences are “operably linked” to the immunoglobulin construct gene sequences. As used herein, the term “operably linked” refers to both expression control sequences that are contiguous with the gene of interest and expression control sequences that act in trans or at a distance to control the gene of interest.
Examples of constitutive promoters suitable for controlling expression of the antibody domains include, but are not limited to chicken β-actin (CB) or beta actin promoters from other species, human cytomegalovirus (CMV) promoter, the early and late promoters of simian virus 40 (SV40), U6 promoter, metallothionein promoters, EFlα promoter, ubiquitin promoter, hypoxanthine phosphoribosyl transferase (HPRT) promoter, dihydrofolate reductase (DHFR) promoter (Scharfmann et al., Proc. Natl. Acad. Sci. USA 88:4626-4630 (1991)), adenosine deaminase promoter, phosphoglycerol kinase (PGK) promoter, pyruvate kinase promoter phosphoglycerol mutase promoter, the β-actin promoter (Lai et al., Proc. Natl. Acad. Sci. USA 86: 10006-10010 (1989)), UbB, UbC, the long terminal repeats (LTR) of Moloney Leukemia Virus and other retroviruses, the thymidine kinase promoter of Herpes Simplex Virus and other constitutive promoters known to those of skill in the art. Examples of tissue- or cell-specific promoters suitable for use in the present invention include, but are not limited to, endothelin-I (ET-I) and Flt-I, which are specific for endothelial cells, FoxJ1 (that targets ciliated cells).
Inducible promoters suitable for controlling expression of the antibody domains include promoters responsive to exogenous agents (e.g., pharmacological agents) or to physiological cues. These response elements include, but are not limited to a hypoxia response element (HRE) that binds HIF-Iα and β, a metal-ion response element such as described by Mayo et al. (1982, Cell 29:99-108); Brinster et al. (1982, Nature 296:39-42) and Searle et al. (1985, Mol. Cell. Biol. 5:1480-1489); or a heat shock response element such as described by Nouer et al. (in: Heat Shock Response, ed. Nouer, L., CRC, Boca Raton, Fla., ppI67-220, 1991).
In one embodiment, expression of an open reading frame is controlled by a regulatable promoter that provides tight control over the transcription of the ORF (gene), e.g., a pharmacological agent, or transcription factors activated by a pharmacological agent or in alternative embodiments, physiological cues. Examples of regulatable promoters which are ligand-dependent transcription factor complexes that may be used include, without limitation, members of the nuclear receptor superfamily activated by their respective ligands (e.g., glucocorticoid, estrogen, progestin, retinoid, ecdysone, and analogs and mimetics thereof) and rTTA activated by tetracycline. Examples of such systems, include, without limitation, the ARGENT™ Transcriptional Technology (ARIAD Pharmaceuticals, Cambridge, Mass.). Examples of such promoter systems are described, e.g., in WO 2012/145572, which is incorporated by reference herein.
Still other promoters may include, e.g., human cytomegalovirus (CMV) immediate-early enhancer/promoter, the SV40 early enhancer/promoter, the JC polymavirus promoter, myelin basic protein (MBP) or glial fibrillary acidic protein (GFAP) promoters, herpes simplex virus (HSV-1) latency associated promoter (LAP), rouse sarcoma virus (RSV) long terminal repeat (LTR) promoter, neuron-specific promoter (NSE), platelet derived growth factor (PDGF) promoter, hSYN, melanin-concentrating hormone (MCH) promoter, CBA, matrix metalloprotein promoter (MPP), and the chicken beta-actin promoter. The promoters may the same or different for each expression cassette.
For use in producing an AAV viral vector (e.g., a recombinant (r) AAV), the expression cassettes can be carried on any suitable vector, e.g., a plasmid, which is delivered to a packaging host cell. The plasmids useful in this invention may be engineered such that they are suitable for replication and packaging in prokaryotic cells, mammalian cells, or both. Suitable transfection techniques and packaging host cells are known and/or can be readily designed by one of skill in the art.
Methods for generating and isolating AAVs suitable for use as vectors are known in the art. See generally, e.g., Grieger & Samulski, 2005, “Adeno-associated virus as a gene therapy vector: Vector development, production and clinical applications,” Adv. Biochem. Engin/Biotechnol. 99: 119-145; Buning et al., 2008, “Recent developments in adeno-associated virus vector technology,” J. Gene Med. 10:717-733; and the references cited below, each of which is incorporated herein by reference in its entirety. For packaging a transgene into virions, the ITRs are the only AAV components required in cis in the same construct as the nucleic acid molecule containing the expression cassettes. The cap and rep genes can be supplied in trans.
As described above, the term “about” when used to modify a numerical value means a variation of ±10%, unless otherwise specified.
As used throughout this specification and the claims, the terms “comprise” and “contain” and its variants including, “comprises”, “comprising”, “contains” and “containing”, among other variants, is inclusive of other components, elements, integers, steps and the like. The term “consists of” or “consisting of” are exclusive of other components, elements, integers, steps and the like.
The terms “identical” or percent “identity,” in the context of two or more nucleic acids or polypeptide sequences, refer to two or more sequences or subsequences that are the same or have a specified percentage of amino acid residues or nucleotides that are the same (i.e., about 70% identity, preferably 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or higher identity over a specified region (e.g., any one of the modified ORFs provided herein) when compared and aligned for maximum correspondence over a comparison window or designated region) as measured using a BLAST or BLAST 2.0 sequence comparison algorithms with default parameters described below, or by manual alignment and visual inspection (see, e.g., NCBI web site or the like). As another example, polynucleotide sequences can be compared using Fasta, a program in GCG Version 6.1. Fasta provides alignments and percent sequence identity of the regions of the best overlap between the query and search sequences. For instance, percent sequence identity between nucleic acid sequences can be determined using Fasta with its default parameters (a word size of 6 and the NOPAM factor for the scoring matrix) as provided in GCG Version 6.1, herein incorporated by reference. Generally, these programs are used at default settings, although one skilled in the art can alter these settings as needed. Alternatively, one of skill in the art can utilize another algorithm or computer program that provides at least the level of identity or alignment as that provided by the referenced algorithms and programs. This definition also refers to, or can be applied to, the compliment of a sequence. The definition also includes sequences that have deletions and/or additions, as well as those that have substitutions. As described below, the preferred algorithms can account for gaps and the like. Preferably, identity exists over a region that is at least about 25, 50, 75, 100, 150, 200 amino acids or nucleotides in length, and oftentimes over a region that is 225, 250, 300, 350, 400, 450, 500 amino acids or nucleotides in length or over the full-length of an amino acid or nucleic acid sequences.
Typically, when an alignment is prepared based upon an amino acid sequence, the alignment contains insertions and deletions which are so identified with respect to a reference AAV sequence and the numbering of the amino acid residues is based upon a reference scale provided for the alignment. However, any given AAV sequence may have fewer amino acid residues than the reference scale. In the present invention, when discussing the parental sequence, the term “the same position” or the “corresponding position” refers to the amino acid located at the same residue number in each of the sequences, with respect to the reference scale for the aligned sequences. However, when taken out of the alignment, each of the proteins may have these amino acids located at different residue numbers. Alignments are performed using any of a variety of publicly or commercially available Multiple Sequence Alignment Programs. Sequence alignment programs are available for amino acid sequences, e.g., the “Clustal X”, “MAP”, “PIMA”, “MSA”, “BLOCKMAKER”, “MEME”, and “Match-Box” programs. Generally, any of these programs are used at default settings, although one of skill in the art can alter these settings as needed. Alternatively, one of skill in the art can utilize another algorithm or computer program which provides at least the level of identity or alignment as that provided by the referenced algorithms and programs. See, e.g., J. D. Thomson et al, Nucl. Acids. Res., “A comprehensive comparison of multiple sequence alignments”, 27(13):2682-2690 (1999).
In one embodiment, the expression cassettes described herein are engineered into a genetic element (e.g., a shuttle plasmid) which transfers the immunoglobulin construct sequences carried thereon into a packaging host cell for production a viral vector. In one embodiment, the selected genetic element may be delivered to a an AAV packaging cell by any suitable method, including transfection, electroporation, liposome delivery, membrane fusion techniques, high velocity DNA-coated pellets, viral infection and protoplast fusion. Stable AAV packaging cells can also be made. Alternatively, the expression cassettes may be used to generate a viral vector other than AAV, or for production of mixtures of antibodies in vitro. The methods used to make such constructs are known to those with skill in nucleic acid manipulation and include genetic engineering, recombinant engineering, and synthetic techniques. See, e.g., Molecular Cloning: A Laboratory Manual, ed. Green and Sambrook, Cold Spring Harbor Press, Cold Spring Harbor, N.Y. (2012).
AAV Vectors
A recombinant AAV vector (AAV viral particle) may comprise, packaged within an AAV capsid, a nucleic acid molecule containing a 5′ AAV ITR, the expression cassettes described herein and a 3′ AAV ITR. As described herein, an expression cassette may contain regulatory elements for an open reading frame(s) within each expression cassette and the nucleic acid molecule may optionally contain additional regulatory elements.
The AAV vector may contain a full-length AAV 5′ inverted terminal repeat (ITR) and a full-length 3′ ITR. A shortened version of the 5′ ITR, termed ΔITR, has been described in which the D-sequence and terminal resolution site (trs) are deleted. The abbreviation “sc” refers to self-complementary. “Self-complementary AAV” refers a construct in which a coding region carried by a recombinant AAV nucleic acid sequence has been designed to form an intra-molecular double-stranded DNA template. Upon infection, rather than waiting for cell mediated synthesis of the second strand, the two complementary halves of scAAV will associate to form one double stranded DNA (dsDNA) unit that is ready for immediate replication and transcription. See, e.g., D M McCarty et al, “Self-complementary recombinant adeno-associated virus (scAAV) vectors promote efficient transduction independently of DNA synthesis”, Gene Therapy, (August 2001), Vol 8, Number 16, Pages 1248-1254. Self-complementary AAVs are described in, e.g., U.S. Pat. Nos. 6,596,535; 7,125,717; and 7,456,683, each of which is incorporated herein by reference in its entirety.
Where a pseudotyped AAV is to be produced, the ITRs are selected from a source which differs from the AAV source of the capsid. For example, AAV2 ITRs may be selected for use with an AAV capsid having a particular efficiency for a selected cellular receptor, target tissue or viral target. In one embodiment, the ITR sequences from AAV2, or the deleted version thereof (ΔITR), are used for convenience and to accelerate regulatory approval. However, ITRs from other AAV sources may be selected. Where the source of the ITRs is from AAV2 and the AAV capsid is from another AAV source, the resulting vector may be termed pseudotyped. However, other sources of AAV ITRs may be utilized.
A variety of AAV capsids have been described. Methods of generating AAV vectors have been described extensively in the literature and patent documents, including, e.g., WO 2003/042397; WO 2005/033321, WO 2006/110689; U.S. Pat. No. 7,588,772 B2. The source of AAV capsids may be selected from an AAV which targets a desired tissue. For example, suitable AAV may include, e.g., AAV9 [U.S. Pat. No. 7,906,111; US 2011-0236353-A1], rh10 [WO 2003/042397] and/or hu37 [see, e.g., U.S. Pat. No. 7,906,111; US 2011-0236353-A1]. However, other AAV, including, e.g., AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, [U.S. Pat. No. 7,790,449; U.S. Pat. No. 7,282,199] and others. However, other sources of AAV capsids and other viral elements may be selected, as may other immunoglobulin constructs and other vector elements.
A single-stranded AAV viral vector is provided. Methods for generating and isolating AAV viral vectors suitable for delivery to a subject are known in the art. See, e.g., U.S. Pat. No. 7,790,449; U.S. Pat. No. 7,282,199; WO 2003/042397; WO 2005/033321, WO 2006/110689; and U.S. Pat. No. 7,588,772 B2]. In one system, a producer cell line is transiently transfected with a construct that encodes the transgene flanked by ITRs and a construct(s) that encodes rep and cap. In a second system, a packaging cell line that stably supplies rep and cap is transiently transfected with a construct encoding the transgene flanked by ITRs. In each of these systems, AAV virions are produced in response to infection with helper adenovirus or herpesvirus, requiring the separation of the rAAVs from contaminating virus. More recently, systems have been developed that do not require infection with helper virus to recover the AAV—the required helper functions (i.e., adenovirus E1, E2a, VA, and E4 or herpesvirus ULS, ULB, UL52, and UL29, and herpesvirus polymerase) are also supplied, in trans, by the system. In these newer systems, the helper functions can be supplied by transient transfection of the cells with constructs that encode the required helper functions, or the cells can be engineered to stably contain genes encoding the helper functions, the expression of which can be controlled at the transcriptional or posttranscriptional level. In yet another system, the transgene flanked by ITRs and rep/cap genes are introduced into insect cells by infection with baculovirus-based vectors. For reviews on these production systems, see generally, e.g., Zhang et al., 2009, “Adenovirus-adeno-associated virus hybrid for large-scale recombinant adeno-associated virus production,” Human Gene Therapy 20:922-929, the contents of each of which is incorporated herein by reference in its entirety. Methods of making and using these and other AAV production systems are also described in the following U.S. patents, the contents of which is incorporated herein by reference in its entirety: U.S. Pat. Nos. 5,139,941; 5,741,683; 6,057,152; 6,204,059; 6,268,213; 6,491,907; 6,660,514; 6,951,753; 7,094,604; 7,172,893; 7,201,898; 7,229,823; and 7,439,065.
Uses and Regimens
The rAAV, preferably suspended in a physiologically compatible carrier, may be administered to a human or non-human mammalian patient. Suitable carriers may be readily selected by one of skill in the art in view of the indication for which the transfer virus is directed. For example, one suitable carrier includes saline, which may be formulated with a variety of buffering solutions (e.g., phosphate buffered saline). Other exemplary carriers include sterile saline, lactose, sucrose, maltose, and water. The selection of the carrier is not a limitation of the present invention. Optionally, the compositions of the invention may contain, in addition to the rAAV and carrier(s), other conventional pharmaceutical ingredients, such as preservatives, or chemical stabilizers.
Methods for using these rAAV, e.g., for passive immunization are described, e.g., in WO 2012/145572. Other methods of delivery and uses will be apparent to one of skill in the art. For example, a regimen as described herein may comprise, in addition to one or more of the combinations described herein, further combination with one or more of a biological drug, a small molecule drug, a chemotherapeutic agent, immune enhancers, radiation, surgery, and the like. A biological drug as described herein, is based on a peptide, polypeptide, protein, enzyme, nucleic acid molecule, vector (including viral vectors), or the like.
In a combination therapy, the AAV-delivered immunoglobulin construct described herein is administered before, during, or after commencing therapy with another agent, as well as any combination thereof, i.e., before and during, before and after, during and after, or before, during and after commencing the therapy. For example, the AAV can be administered between 1 and 30 days, preferably 3 and 20 days, more preferably between 5 and 12 days before commencing radiation therapy. In another embodiment of the invention, chemotherapy is administered concurrently with or, more preferably, subsequent to AAV-mediated immunoglobulin (antibody) therapy. In still other embodiments, the compositions of the invention may be combined with other biologics, e.g., recombinant monoclonal antibody drugs, antibody-drug conjugates, or the like. Further, combinations of different AAV-delivered immunoglobulin constructs such as are discussed above may be used in such regimens.
Any suitable method or route can be used to administer AAV-containing compositions as described herein, and optionally, to co-administer other active drugs or therapies in conjunction with the AAV-mediated antibodies described herein. Routes of administration include, for example, systemic, oral, intravenous, intraperitoneal, subcutaneous, or intramuscular administration.
Targets for the immunoglobulin constructs described herein may be selected from a variety of pathogens, including, e.g., bacterial, viral, fungal and parasitic infectious agents. Suitable targets may further include cancer or cancer-associated antigens, or the like. Still other targets may include an autoimmune condition such as rheumatoid arthritis (RA) or multiple sclerosis (MS).
Examples of viral targets include influenza virus from the orthomyxovirudae family, which includes: Influenza A, Influenza B, and Influenza C. The type A viruses are the most virulent human pathogens. The serotypes of influenza A which have been associated with pandemics include, H1N1, which caused Spanish Flu in 1918, and Swine Flu in 2009; H2N2, which caused Asian Flu in 1957; H3N2, which caused Hong Kong Flu in 1968; H5N1, which caused Bird Flu in 2004; H7N7; H1N2; H9N2; H7N2; H7N3; and H10N7.
Broadly neutralizing antibodies against influenza A have been described. As used herein, a “broadly neutralizing antibody” refers to a neutralizing antibody which can neutralize multiple strains from multiple subtypes. For example, CR6261 [The Scripps Institute/Crucell] has been described as a monoclonal antibody that binds to a broad range of the influenza virus including the 1918 “Spanish flu” (SC1918/H1) and to a virus of the H5N1 class of avian influenza that jumped from chickens to a human in Vietnam in 2004 (Viet04/H5). CR6261 recognizes a highly conserved helical region in the membrane-proximal stem of hemagglutinin, the predominant protein on the surface of the influenza virus. This antibody is described in WO 2010/130636, incorporated by reference herein. Another neutralizing antibody, F10 [XOMA Ltd] has been described as being useful against H1N1 and H5N1. [Sui et al, Nature Structural and Molecular Biology (Sui, et al. 2009, 16(3):265-73)] Other antibodies against influenza, e.g., Fab28 and Fab49, may be selected. See, e.g., WO 2010/140114 and WO 2009/115972, which are incorporated by reference. Still other antibodies, such as those described in WO 2010/010466, US Published Patent Publication US/2011/076265, and WO 2008/156763, may be readily selected.
Other target pathogenic viruses include, arenaviruses (including funin, machupo, and Lassa), filoviruses (including Marburg and Ebola), hantaviruses, picornaviridae (including rhinoviruses, echovirus), coronaviruses, paramyxovirus, morbillivirus, respiratory syncytial virus, togavirus, coxsackievirus, parvovirus B19, parainfluenza, adenoviruses, reoviruses, variola (Variola major (Smallpox)) and Vaccinia (Cowpox) from the poxvirus family, and varicella-zoster (pseudorabies).
Viral hemorrhagic fevers are caused by members of the arenavirus family (Lassa fever) (which family is also associated with Lymphocytic choriomeningitis (LCM)), filovirus (ebola virus), and hantavirus (puremala). The members of picornavirus (a subfamily of rhinoviruses), are associated with the common cold in humans. The coronavirus family includes a number of non-human viruses such as infectious bronchitis virus (poultry), porcine transmissible gastroenteric virus (pig), porcine hemagglutinatin encephalomyelitis virus (pig), feline infectious peritonitis virus (cat), feline enteric coronavirus (cat), canine coronavirus (dog). The human respiratory coronaviruses, have been putatively associated with the common cold, non-A, B or C hepatitis, and sudden acute respiratory syndrome (SARS). The paramyxovirus family includes parainfluenza Virus Type 1, parainfluenza Virus Type 3, bovine parainfluenza Virus Type 3, rubulavirus (mumps virus), parainfluenza Virus Type 2, parainfluenza virus Type 4, Newcastle disease virus (chickens), rinderpest, morbillivirus, which includes measles and canine distemper, and pneumovirus, which includes respiratory syncytial virus (RSV). The parvovirus family includes feline parvovirus (feline enteritis), feline panleucopeniavirus, canine parvovirus, and porcine parvovirus. The adenovirus family includes viruses (EX, AD7, ARD, O.B.) which cause respiratory disease.
A neutralizing antibody construct against a bacterial pathogen may also be selected for use in the present invention. In one embodiment, the neutralizing antibody construct is directed against the bacteria itself. In another embodiment, the neutralizing antibody construct is directed against a toxin produced by the bacteria. Examples of airborne bacterial pathogens include, e.g., Neisseria meningitidis (meningitis), Klebsiella pneumonia (pneumonia), Pseudomonas aeruginosa (pneumonia), Pseudomonas pseudomallei (pneumonia), Pseudomonas mallei (pneumonia), Acinetobacter (pneumonia), Moraxella catarrhalis, Moraxella lacunata, Alkaligenes, Cardiobacterium, Haemophilus influenzae (flu), Haemophilus parainfluenzae, Bordetella pertussis (whooping cough), Francisella tularensis (pneumonia/fever), Legionella pneumonia (Legionnaires disease), Chlamydia psittaci (pneumonia), Chlamydia pneumoniae (pneumonia), Mycobacterium tuberculosis (tuberculosis (TB)), Mycobacterium kansasii (TB), Mycobacterium avium (pneumonia), Nocardia asteroides (pneumonia), Bacillus anthracis (anthrax), Staphylococcus aureus (pneumonia), Streptococcus pyogenes (scarlet fever), Streptococcus pneumoniae (pneumonia), Corynebacteria diphtheria (diphtheria), Mycoplasma pneumoniae (pneumonia).
The causative agent of anthrax is a toxin produced by Bacillus anthracis. Neutralizing antibodies against protective agent (PA), one of the three peptides which form the toxoid, have been described. The other two polypeptides consist of lethal factor (LF) and edema factor (EF). Anti-PA neutralizing antibodies have been described as being effective in passively immunization against anthrax. See, e.g., U.S. Pat. No. 7,442,373; R. Sawada-Hirai et al, J Immune Based Ther Vaccines. 2004; 2: 5. (on-line 2004 May 12). Still other anti-anthrax toxin neutralizing antibodies have been described and/or may be generated. Similarly, neutralizing antibodies against other bacteria and/or bacterial toxins may be used to generate an AAV-delivered anti-pathogen construct as described herein.
Other infectious diseases may be caused by airborne fungi including, e.g., Aspergillus species, Absidia corymbifera, Rhixpus stolonifer, Mucor plumbeaus, Cryptococcus neoformans, Histoplasm capsulatum, Blastomyces dermatitidis, Coccidioides immitis, Penicillium species, Micropolyspora faeni, Thermoactinomyces vulgaris, Alternaria alternate, Cladosporium species, Helminthosporium, and Stachybotrys species.
In addition, passive immunization may be used to prevent fungal infections (e.g., athlete's foot), ringworm, or viruses, bacteria, parasites, fungi, and other pathogens which can be transmitted by direct contact. In addition, a variety of conditions which affect household pets, cattle and other livestock, and other animals. For example, in dogs, infection of the upper respiratory tract by canine sinonasal aspergillosis causes significant disease. In cats, upper respiratory disease or feline respiratory disease complex originating in the nose causes morbidity and mortality if left untreated. Cattle are prone to infections by the infectious bovine rhinotracheitis (commonly called IBR or red nose) is an acute, contagious virus disease of cattle. In addition, cattle are prone to Bovine Respiratory Syncytial Virus (BRSV) which causes mild to severe respiratory disease and can impair resistance to other diseases. Still other pathogens and diseases will be apparent to one of skill in the art. See, e.g., U.S. Pat. No. 5,811,524, which describes generation of anti-respiratory syncytial virus (RSV) neutralizing antibodies. The techniques described therein are applicable to other pathogens. Such an antibody may be used intact or its sequences (scaffold) modified to generate an artificial or recombinant neutralizing antibody construct. Such methods have been described [see, e.g., WO 2010/13036; WO 2009/115972; WO 2010/140114].
Anti-neoplastic immunoglobulins as described herein may target a human epidermal growth factor receptor (HER), such as HER2. For example, trastuzumab is a recombinant IgG1 kappa, humanized monoclonal antibody that selectively binds with high affinity in a cell-based assay (Kd=5 nM) to the extracellular domain of the human epidermal growth factor receptor protein. The commercially available product is produced in CHO cell culture. See, e.g., www.drugbank.ca/drugs/DB00072. The amino acid sequences of the trastuzumab light chains 1 and 2 and heavy chains 1 and 2, as well as sequences obtained from a study of the x-ray structure of trastuzumab, are provided on this database at accession number DB00072, which sequences are incorporated herein by reference. See, also, 212-Pb-TCMC-trastuzumab [Areva Med, Bethesda, Md.]. Another antibody of interest includes, e.g., pertuzumab, a recombinant humanized monoclonal antibody that targets the extracellular dimerization domain (Subdomain II) of the human epidermal growth factor receptor 2 protein (HER2). It consists of two heavy chains and two lights chains that have 448 and 214 residues respectively. FDA approved Jun. 8, 2012. The amino acid sequences of its heavy chain and light chain are provided, e.g., in www.drugbank.ca/drugs/DB06366 (synonyms include 2C4, MOAB 2C4, monoclonal antibody 2C4, and rhuMAb-2C4) on this database at accession number DB06366. In addition to HER2, other HER targets may be selected.
For example, MM-121/SAR256212 is a fully human monoclonal antibody that targets the HER3 receptor [Merrimack's Network Biology] and which has been reported to be useful in the treatment of non-small cell lung cancer (NSCLC), breast cancer and ovarian cancer. SAR256212 is an investigational fully human monoclonal antibody that targets the HER3 (ErbB3) receptor [Sanofi Oncology]. Another anti-Her3/EGFR antibody is RG7597 [Genentech], described as being useful in head and neck cancers. Another antibody, margetuximab (or MGAH22), a next-generation, Fc-optimized monoclonal antibody (mAb) that targets HER [MacroGenics], may also be utilized.
Alternatively, other human epithelial cell surface markers and/or other tumor receptors or antigens may be targeted. Examples of other cell surface marker targets include, e.g., 5T4, CA-125, CEA (e.g., targeted by labetuzumab), CD3, CD19, CD20 (e.g., targeted by rituximab), CD22 (e.g., targeted by epratuzumab or veltuzumab), CD30, CD33, CD40, CD44, CD51 (also integrin avf33), CD133 (e.g., glioblastoma cells), CTLA-4 (e.g., Ipilimumab used in treatment of, e.g., neuroblastoma)), Chemokine (C-X-C Motif) Receptor 2 (CXCR2) (expressed in different regions in brain; e.g., Anti-CXCR2 (extracellular) antibody #ACR-012 (Alomene Labs)); EpCAM, fibroblast activation protein (FAP) [see, e.g., WO 2012020006 A2, brain cancers], folate receptor alpha (e.g., pediatric ependymal brain tumors, head and neck cancers), fibroblast growth factor receptor 1 (FGFR1) (see, et al, WO2012125124A1 for discussion treatment of cancers with anti-FGFR1 antibodies), FGFR2 (see, e.g., antibodies described in WO2013076186A and WO2011143318A2), FGFR3 (see, e.g., antibodies described in U.S. Pat. No. 8,187,601 and WO2010111367A1), FGFR4 (see, e.g., anti-FGFR4 antibodies described in WO2012138975A1), hepatocyte growth factor (HGF) (see, e.g., antibodies in WO2010119991A3), integrin α5β1, IGF-1 receptor, gangioloside GD2 (see, e.g., antibodies described in WO2011160119A2), ganglioside GD3, transmembrane glycoprotein NMB (GPNMB) (associated with gliomas, among others and target of the antibody glembatumumab (CR011), mucin, MUC1, phosphatidylserine (e.g., targeted by bavituximab, Peregrine Pharmaceuticals, Inc], prostatic carcinoma cells, PD-L1 (e.g., nivolumab (BMS-936558, MDX-1106, ONO-4538), a fully human gG4, e.g., metastatic melanoma], platelet-derived growth factor receptor, alpha (PDGFR α) or CD140, tumor associated glycoprotein 72 (TAG-72), tenascin C, tumor necrosis factor (TNF) receptor (TRAIL-R2), vascular endothelial growth factor (VEGF)-A (e.g., targeted by bevacizumab) and VEGFR2 (e.g., targeted by ramucirumab).
Other antibodies and their targets include, e.g., APN301 (hu14.19-IL2), a monoclonal antibody [malignant melanoma and neuroblastoma in children, Apeiron Biolgics, Vienna, Austria]. See, also, e.g., monoclonal antibody, 8H9, which has been described as being useful for the treatment of solid tumors, including metastatic brain cancer. The monoclonal antibody 8H9 is a mouse IgG1 antibody with specificity for the B7H3 antigen [United Therapeutics Corporation]. This mouse antibody can be humanized Still other immunoglobulin constructs targeting the B7-H3 and/or the B7-H4 antigen may be used in the invention. Another antibody is S58 (anti-GD2, neuroblastoma). Cotara™ [Perregrince Pharmaceuticals] is a monoclonal antibody described for treatment of recurrent glioblastoma. Other antibodies may include, e.g., avastin, ficlatuzumab, medi-575, and olaratumab. Still other immunoglobulin constructs or monoclonal antibodies may be selected for use in the invention. See, e.g., Medicines in Development Biologics, 2013 Report, pp. 1-87, a publication of PhRMA's Communications & Public Affairs Department. (202) 835-3460, which is incorporated by reference herein.
For example, immunogens may be selected from a variety of viral families. Example of viral families against which an immune response would be desirable include, the picornavirus family, which includes the genera rhinoviruses, which are responsible for about 50% of cases of the common cold; the genera enteroviruses, which include polioviruses, coxsackieviruses, echoviruses, and human enteroviruses such as hepatitis A virus; and the genera apthoviruses, which are responsible for foot and mouth diseases, primarily in non-human animals. Within the picornavirus family of viruses, target antigens include the VP1, VP2, VP3, VP4, and VPG. Another viral family includes the calcivirus family, which encompasses the Norwalk group of viruses, which are an important causative agent of epidemic gastroenteritis. Still another viral family desirable for use in targeting antigens for inducing immune responses in humans and non-human animals is the togavirus family, which includes the genera alphavirus, which include Sindbis viruses, RossRiver virus, and Venezuelan, Eastern & Western Equine encephalitis, and rubivirus, including Rubella virus. The flaviviridae family includes dengue, yellow fever, Japanese encephalitis, St. Louis encephalitis and tick borne encephalitis viruses. Other target antigens may be generated from the Hepatitis C or the coronavirus family, which includes a number of non-human viruses such as infectious bronchitis virus (poultry), porcine transmissible gastroenteric virus (pig), porcine hemagglutinating encephalomyelitis virus (pig), feline infectious peritonitis virus (cats), feline enteric coronavirus (cat), canine coronavirus (dog), and human respiratory coronaviruses, which may cause the common cold and/or non-A, B or C hepatitis. Within the coronavirus family, target antigens include the E1 (also called M or matrix protein), E2 (also called S or Spike protein), E3 (also called HE or hemagglutin-elterose) glycoprotein (not present in all coronaviruses), or N (nucleocapsid). Still other antigens may be targeted against the rhabdovirus family, which includes the genera vesiculovirus (e.g., Vesicular Stomatitis Virus), and the general lyssavirus (e.g., rabies).
Within the rhabdovirus family, suitable antigens may be derived from the G protein or the N protein. The family filoviridae, which includes hemorrhagic fever viruses such as Marburg and Ebola virus, may be a suitable source of antigens. The paramyxovirus family includes parainfluenza Virus Type 1, parainfluenza Virus Type 3, bovine parainfluenza Virus Type 3, rubulavirus (mumps virus), parainfluenza Virus Type 2, parainfluenza virus Type 4, Newcastle disease virus (chickens), rinderpest, morbillivirus, which includes measles and canine distemper, and pneumovirus, which includes respiratory syncytial virus. The influenza virus is classified within the family orthomyxovirus and is a suitable source of antigen (e.g., the HA protein, the N1 protein). The bunyavirus family includes the genera bunyavirus (California encephalitis, La Crosse), phlebovirus (Rift Valley Fever), hantavirus (puremala is a hemahagin fever virus), nairovirus (Nairobi sheep disease) and various unassigned bunyaviruses. The arenavirus family provides a source of antigens against LCM and Lassa fever virus. The reovirus family includes the genera reovirus, rotavirus (which causes acute gastroenteritis in children), orbiviruses, and cultivirus (Colorado Tick fever, Lebombo (humans), equine encephalosis, blue tongue).
The retrovirus family includes the sub-family oncorivirinal which encompasses such human and veterinary diseases as feline leukemia virus, HTLVI and HTLVII, lentivirinal (which includes human immunodeficiency virus (HIV), simian immunodeficiency virus (SIV), feline immunodeficiency virus (FIV), equine infectious anemia virus, and spumavirinal). Among the lentiviruses, many suitable antigens have been described and can readily be selected as targets. Examples of suitable HIV and SIV antigens include, without limitation the gag, pol, Vif, Vpx, VPR, Env, Tat, Nef, and Rev proteins, as well as various fragments thereof. For example, suitable fragments of the Env protein may include any of its subunits such as the gp120, gp160, gp41, or smaller fragments thereof, e.g., of at least about 8 amino acids in length. Similarly, fragments of the tat protein may be selected. [See, U.S. Pat. No. 5,891,994 and U.S. Pat. No. 6,193,981.] See, also, the HIV and SIV proteins described in D. H. Barouch et al, J. Virol., 75(5):2462-2467 (March 2001), and R. R. Amara, et al, Science, 292:69-74 (6 Apr. 2001). In another example, the HIV and/or SIV immunogenic proteins or peptides may be used to form fusion proteins or other immunogenic molecules. See, e.g., the HIV-1 Tat and/or Nef fusion proteins and immunization regimens described in WO 01/54719, published Aug. 2, 2001, and WO 99/16884, published Apr. 8, 1999. The invention is not limited to the HIV and/or SIV immunogenic proteins or peptides described herein. In addition, a variety of modifications to these proteins has been described or could readily be made by one of skill in the art. See, e.g., the modified gag protein that is described in U.S. Pat. No. 5,972,596.
The papovavirus family includes the sub-family polyomaviruses (BKU and JCU viruses) and the sub-family papillomavirus (associated with cancers or malignant progression of papilloma). The adenovirus family includes viruses (EX, AD7, ARD, O.B.) which cause respiratory disease and/or enteritis. The parvovirus family includes feline parvovirus (feline enteritis), feline panleucopeniavirus, canine parvovirus, and porcine parvovirus. The herpesvirus family includes the sub-family alphaherpesvirinae, which encompasses the genera simplexvirus (HSVI, HSVII), varicellovirus (pseudorabies, varicella zoster) and the sub-family betaherpesvirinae, which includes the genera cytomegalovirus (HCMV, muromegalovirus) and the sub-family gammaherpesvirinae, which includes the genera lymphocryptovirus, EBV (Burkitts lymphoma), infectious rhinotracheitis, Marek's disease virus, and rhadinovirus. The poxvirus family includes the sub-family chordopoxvirinae, which encompasses the genera orthopoxvirus (Variola (Smallpox) and Vaccinia (Cowpox)), parapoxvirus, avipoxvirus, capripoxvirus, leporipoxvirus, suipoxvirus, and the sub-family entomopoxvirinae. The hepadnavirus family includes the Hepatitis B virus. One unclassified virus which may be suitable source of antigens is the Hepatitis delta virus. Still other viral sources may include avian infectious bursal disease virus and porcine respiratory and reproductive syndrome virus. The alphavirus family includes equine arteritis virus and various Encephalitis viruses.
Other pathogenic targets for antibodies may include, e.g., bacteria, fungi, parasitic microorganisms or multicellular parasites which infect human and non-human vertebrates, or from a cancer cell or tumor cell. Examples of bacterial pathogens include pathogenic gram-positive cocci include pneumococci; staphylococci; and streptococci. Pathogenic gram-negative cocci include meningococcus; gonococcus. Pathogenic enteric gram-negative bacilli include enterobacteriaceae; pseudomonas, acinetobacteria and eikenella; melioidosis; salmonella; shigella; haemophilus; moraxella; H. ducreyi (which causes chancroid); brucella; Franisella tularensis (which causes tularemia); yersinia (pasteurella); streptobacillus moniliformis and spirillum; Gram-positive bacilli include listeria monocytogenes; erysipelothrix rhusiopathiae; Corynebacterium diphtheria (diphtheria); cholera; B. anthracis (anthrax); donovanosis (granuloma inguinale); and bartonellosis. Diseases caused by pathogenic anaerobic bacteria include tetanus; botulism; other clostridia; tuberculosis; leprosy; and other mycobacteria. Pathogenic spirochetal diseases include syphilis; treponematoses: yaws, pinta and endemic syphilis; and leptospirosis. Other infections caused by higher pathogen bacteria and pathogenic fungi include actinomycosis; nocardiosis; cryptococcosis, blastomycosis, histoplasmosis and coccidioidomycosis; candidiasis, aspergillosis, and mucormycosis; sporotrichosis; paracoccidiodomycosis, petriellidiosis, torulopsosis, mycetoma and chromomycosis; and dermatophytosis. Rickettsial infections include Typhus fever, Rocky Mountain spotted fever, Q fever, and Rickettsialpox. Examples of mycoplasma and chlamydial infections include: mycoplasma pneumoniae; lymphogranuloma venereum; psittacosis; and perinatal chlamydial infections. Pathogenic eukaryotes encompass pathogenic protozoa and helminthes and infections produced thereby include: amebiasis; malaria; leishmaniasis; trypanosomiasis; toxoplasmosis; Pneumocystis carinii; Trichans; Toxoplasma gondii; babesiosis; giardiasis; trichinosis; filariasis; schistosomiasis; nematodes; trematodes or flukes; and cestode (tapeworm) infections.
Many of these organisms and/or toxins produced thereby have been identified by the Centers for Disease Control [(CDC), Department of Health and Human Services, USA], as agents which have potential for use in biological attacks. For example, some of these biological agents, include, Bacillus anthracis (anthrax), Clostridium botulinum and its toxin (botulism), Yersinia pestis (plague), variola major (smallpox), Francisella tularensis (tularemia), and viral hemorrhagic fevers [filoviruses (e.g., Ebola, Marburg], and arenaviruses [e.g., Lassa, Machupo]), all of which are currently classified as Category A agents; Coxiella burnetti (Q fever); Brucella species (brucellosis), Burkholderia mallei (glanders), Burkholderia pseudomallei (meloidosis), Ricinus communis and its toxin (ricin toxin), Clostridium perfringens and its toxin (epsilon toxin), Staphylococcus species and their toxins (enterotoxin B), Chlamydia psittaci (psittacosis), water safety threats (e.g., Vibrio cholerae, Crytosporidium parvum), Typhus fever (Richettsia powazekii), and viral encephalitis (alphaviruses, e.g., Venezuelan equine encephalitis; eastern equine encephalitis; western equine encephalitis); all of which are currently classified as Category B agents; and Nipan virus and hantaviruses, which are currently classified as Category C agents. In addition, other organisms, which are so classified or differently classified, may be identified and/or used for such a purpose in the future. It will be readily understood that the viral vectors and other constructs described herein are useful to target antigens from these organisms, viruses, their toxins or other by-products, which will prevent and/or treat infection or other adverse reactions with these biological agents.
The following examples are illustrative only and are not a limitation on the invention described herein.
A series of cis-plasmids were prepared for use in generating an AAV viral particle containing a nucleic acid molecule for delivery to a host target cell. The nucleic acid molecules comprise AAV2 5′ and 3′ ITR sequences at each terminus, a shared CMV enhancer flanked by two expression cassettes in opposite orientations, where a first expression cassette is controlled by a first minimal CMV promoter and a second expression cassette is controlled by a second minimal CMV promoter. All sequences located between AAV2 ITRs were de novo synthesized by a commercial vendor (GeneArt). All coding sequences for immunoglobulin variable domains were flanked with the unique restriction enzymes to allow convenient shuttling of the desired variable domains. To create constructs with heterologous light chain sequence (kgl), a coding sequence encoding germline light chain (IGKV4-1*01) was de novo synthesized and used to replace FI6 variable light sequence.
An exemplary antibody co-expression shuttle is illustrated in
SEQ ID NO: 1 provides sequences of the FI6 constant regions. The amino acid sequences of the FI6 amino acid light chain is provided in SEQ ID NO: 2.
The cis-plasmid of
Similar antibody co-expression cis-plasmids were generated by subcloning a seasonal flu antibody (CR8033) or a pandemic flu antibody (C05), or an anti-M2e antibody (TCN-032) in the place of 1A6 heavy variable domain in
A series of ELISA assays were performed to characterize expression levels and to assess binding of the FI6 MAB co-expressed with the IA6 MAB from the cis plasmid generated as described in Example 1 after transfection into HEK 293 cells. TSG101 peptide was synthesized using f-Moc chemistry by Mimotopes. All flu antigens were procured from a commercial supplier, ImmuneTechnologies, Inc. ProteinA was purchased from Sigma-Aldrich and was used to monitor expression of total human IgG1. Detection of human IgG1 in tissue culture supernatants was measured by either antigen-specific or proteinA capture ELISA. High binding ELISA plates were coated with 2 μg/ml of HA proteins or peptides, or with 5 μg/ml proteinA diluted in PBS and incubated overnight at 4° C. Wells were washed 5-8 times and blocked with 1 mM EDTA, 5% heat inactivated PBS, 0.07% Tween 20 in PBS for one hour at room temperature. Tissue culture supernatants were added to the plates at various dilutions in duplicates and incubated at 37° C. for one hour. Plates were washed, blocked, and Bio-SP-conjugated Affinipures Goat Anti-Human IgG antibody (Jackson ImmunoResearch Laboratories, Inc., West Grove, Pa., USA) was added at a 1:10,000 dilution. After one hour, plates were washed and streptavidin-conjugated horseradish peroxidase (HRP) was added at a 1:30,000 dilution. After one hour, plates were washed 3,3′,5,5′-tetramethylbenzidine (TMB) was added. The reaction was stopped after 30 minutes at room temperature using 2N sulfuric acid and plates were read at 450 nm using a BioTek μQuant plate reader (Winooski, Vt., USA).
As expected, no binding is observed of FI6 to the TSG101 peptide, the HA (B/Malaysia/2506/2/004), or the HA (Head region only of influenza strain A/Brisbane/59/2007). FI6 binding is observed for this same strain of influenza when the full-length HA is present, as well as for influenza strain HA(dTM)(A/Beijing/01/2009, H1N1)). As expected, FI6 binding is also observed for Protein A.
According to published reports, FI6 produced according to prior art methods binds to full-length HA and to HA stem, but not to the head only region. These data demonstrate that the co-expressed FI6 monoclonal antibody retains its characteristic binding profile.
The possibility of differential detection of two different monoclonal antibodies was assessed in a capture assay. Monoclonal antibodies FI6 and C05 co-expressed from a cis-plasmid prepared as described in Example 1 and transfected into HEK293 cells were assessed for binding. FI6 is expected to bind to full-length HA and to HA stem, but not to the head only region. The results of the binding study illustrated in
6-8 weeks old male RAG KO mice (The Jackson Laboratory Bar Harbor, Me., USA) were housed under pathogen-free conditions at the University of Pennsylvania's Translational Research Laboratories. All animal procedures and protocols were approved by the Institutional Animal Care and Use Committee. Mice were sacrificed by carbon dioxide asphyxiation and death was confirmed by cervical dislocation. For vector administration, mice were anaesthetized with a mixture of 70 mg/kg of body weight ketamine and 7 mg/kg of body weight xylazine by intraperitoneal (IP) injection. Vectors were diluted in phosphate buffered saline (PBS) and IM injections were performed using a Hamilton syringe. Serum was collected weekly via retro-orbital bleeds.
Detection of human IgG1 in tissue culture supernatants was measured by proteinA capture ELISA. High binding ELISA plates were coated with 5 μg/ml proteinA diluted in PBS and incubated overnight at 4° C. Wells were washed 5-8 times and blocked with 1 mM EDTA, 5% heat inactivated PBS, 0.07% Tween 20 in PBS. Mouse serum samples were heat inactivated and added to the plates at various dilutions in duplicates and incubated at 37° C. for one hour. Plates were washed, blocked, and Bio-SP-conjugated Affinipures Goat Anti-Human IgG antibody (Jackson ImmunoResearch Laboratories, Inc., West Grove, Pa., USA) was added at a 1:10,000 dilution. After one hour, plates were washed and incubated with streptavidin-conjugated horseradish peroxidase (HRP) at a 1:30,000 dilution. After one hour, plates were washed 3,3′,5,5′-tetramethylbenzidine (TMB) was added. The reaction was stopped after 30 minutes at room temperature using 2N sulfuric acid and plates were read at 450 nm using a BioTek μQuant plate reader (Winooski, Vt., USA).
The tables below showing expression levels in mice administered an AAV vector co-expressing FI6 with full-length CR8033, C05, or 1A6 monoclonal antibody. RAG knock-out (KO) mice were injected intramuscularly at doses of 1×1011 genome copies (GC) or 1×1010 GC as described in the previous example Expression levels were assessed weekly at days 7, 15, 21, 28, 34, 42, and 49 and measured at a concentration of micrograms/mL. A dose dependent increase in expression was observed for expressed antibodies. The capture antigen used for the assay is Protein A ELISA as described in the previous example
Test
Fi6v3k2 mAb + CR8033 mAb
Article
1.00 × 1011
1.00 × 1010
Dose
average
stdev.
average
stdev.
Day 0
0.00
0.00
0.00
0.00
Day 7
2.92
0.48
0.04
0.07
Day 14
18.30
4.79
1.24
0.66
Day 21
33.69
7.45
2.09
0.88
Day 28
43.38
10.92
2.84
1.81
Day 35
66.45
16.61
4.47
1.86
Day 42
64.25
12.06
4.37
2.35
Day 49
51.36
11.90
3.57
1.52
Test
Fi6v3k2 mAb + CO5 mAb
Article
1.00 × 1011
1.00 × 1010
Dose
average
stdev.
average
stdev.
Day 0
0.00
0.00
0.00
0.00
Day 7
1.73
0.42
0.00
0.00
Day 14
9.95
3.39
0.24
0.22
Day 21
24.74
11.66
0.81
0.24
Day 28
22.32
4.77
1.11
0.17
Day 35
31.67
7.93
1.53
0.28
Day 42
34.69
14.46
1.83
0.29
Day 49
26.14
5.85
1.46
0.49
Test
Fi6v3k2 mAb + 1A6 mAb
Article
1.00 × 1011
1.00 × 1010
Dose
average
stdev.
average
stdev.
Day 0
0
0
0
0
Day 7
2.70
0.75
0
0
Day 14
5.01
0.06
1.58
.055
Day 21
30.16
13.31
1.71
0.52
Day 28
38.18
15.99
2.16
0.59
Day 35
55.18
18.52
4.09
1.53
Day 42
50.49
16.61
3.69
0.94
Day 49
46.66
15.59
3.73
1.09
A. AAV9.BiD.FI6_CR8033mAb and Influenza A Challenge
BALB/c mice were injected with AAV9.BiD.FI6_CR8033mAb delivered intramuscularly (IM) at 1×1011 GC. Two weeks later the mice were challenged intranasally with 5LD50 of mouse adapted PR8 (influenza A). The circle represents the AAV9 construct with a bidirectional promoter expressing synthetic FI6 and CR8033 monoclonal antibodies having the same heterologous light chain. The square represents a positive control, i.e., AAV9 expressing a single antibody type FI6 also delivered at 1×1011 GC, and the triangle represents naïve animals
B. AAV9.BiD.FI6_CR8033mAb and Influenza B Challenge
For AAV9 vector injection: BALB/c female mice were anesthetized by an intramuscular injection of a 100 mg/kg ketamine/10 mg/kg xylazine mixture in PBS, and AAV9.BiD.FI6_CR8033mAb vector was injected intramuscularly (IM) at 1×1011 GC per mouse. BiD vector was compared to an AAV9 expressing a single antibody type CR8033 also delivered at 1×1011 GC, and a negative control (naïve animals).
C. AAV8.F16-TCN032, AAV8.F16-1A6, and AAV8.F16-CR8033 Vectors Administered IM and Mouse Adapted PR8 Influenza A Challenge.
These vectors were made as described in Example 1. 6-8 weeks old male RAG KO mice (The Jackson Laboratory Bar Harbor, Me., USA) were housed under pathogen-free conditions at the University of Pennsylvania's Translational Research Laboratories. All animal procedures and protocols were approved by the Institutional Animal Care and Use Committee. For vector administration, mice were anaesthetized with a mixture of 70 mg/kg of body weight ketamine and 7 mg/kg of body weight xylazine by intraperitoneal (IP) injection. Vectors were diluted in phosphate buffered saline (PBS) and IM injections were performed using a Hamilton syringe. Serum was collected weekly via retro-orbital bleeds.
Detection of human IgG1 in tissue culture supernatants was measured by proteinA capture ELISA. High binding ELISA plates were coated with 5 μg/ml proteinA diluted in PBS and incubated overnight at 4° C. Wells were washed 5-8 times and blocked with 1 mM EDTA, 5% heat inactivated PBS, 0.07% Tween 20 in PBS. Mouse serum samples were heat inactivated and added to the plates at various dilutions in duplicates and incubated at 37° C. for one hour. Plates were washed, blocked, and Bio-SP-conjugated Affinipures Goat Anti-Human IgG antibody (Jackson ImmunoResearch Laboratories, Inc., West Grove, Pa., USA) was added at a 1:10,000 dilution. After one hour, plates were washed and incubated with streptavidin-conjugated horseradish peroxidase (HRP) at a 1:30,000 dilution. After one hour, plates were washed 3,3′,5,5′-tetramethylbenzidine (TMB) was added. The reaction was stopped after 30 minutes at room temperature using 2N sulfuric acid and plates were read at 450 nm using a BioTek μQuant plate reader (Winooski, Vt., USA).
With reference to
D. AAV9. FI6_IA6 mAbs and Influenza A Challenge
An AAV9 vector expressing artificial FI6 and an anti-HIV immunoadhesin, IA6, were assessed for protection against challenge with influenzA A as described above.
Using a shuttle vector similar to that illustrated in
In one embodiment, a vector containing FI6 and C05 immunoadhesins was created. The sequences from a plasmid carrying the FI6 and C05 immunoadhesin expression cassettes are provided in SEQ ID NO: 36; with the translated encoded sequences provided in SEQ ID NO: 37 (FI6 variable heavy chain), SEQ ID NO: 38 (FI6 variable light chain), and SEQ ID NO: 39 (CH2-3). These sequences and their features are incorporated by reference.
In another embodiment, a vector containing FI6 and CR8033 immunoadhesins was created. The sequences from a plasmid containing the FI6 and CR8033 immunoadhesins are provided in SEQ ID NO:40; with the translated encoded sequences provided in SEQ ID NO: 41 (FI6 VH) and SEQ ID NO: 42 (FI6 variable light). These sequences and their features are incorporated by reference.
AAV may be generated from the immunoadhesin shuttle plasmids described above using techniques known to those of skill in the art.
Additional illustrative shuttle plasmids are as follows.
The sequence of a plasmid pN512_ACE FI6v3kgl-1A6 MAB_p3184 containing a kappa germline light chain that is heterologous to the source of both heavy chains, 1A6 and FI6v3 is provided in SEQ ID NO: 14. The translated encode sequences are provide in SEQ ID NO: 15 (constant light), SEQ ID NO: 16 (FI6 variable heavy), SEQ ID NO: 17 (CH1), and SEQ ID NO: 18 (CH2-3).
The sequences of an intermediate vector which carries the TCN032 heavy and light chain immunoglobulins are provided in SEQ ID NO: 30. The translated amino acid sequences encoded by this plasmid include the TCN032 heavy chain in SEQ ID NO: 31; the CH1 sequence in SEQ ID NO: 32; the F16 VH chain in SEQ ID NO: 33; the CH1 sequence in SEQ ID NO: 34 and the CH2-3 sequence in SEQ ID NO: 35.
The sequence of a plasmid carrying the TCN032 and F16 heavy chains and co-expressing two antibodies having these specificities is provided in SEQ ID NO: 43. The translated amino acids of the TCN032 variable heavy chain are in SEQ ID NO: 44, the CH1 is in SEQ ID NO: 45, the hinge-CH2′-CH3′ is in SEQ ID NO: 46, the Fi6 VH is in SEQ ID NO: 47, the CH1 is in SEQ ID NO: 48, the CH2-3 is in SEQ ID NO: 49, and the ampicillin resistance gene is in SEQ ID NO: 50. These sequences and their features are incorporated herein by reference.
The following information is provided for sequences containing free text under numeric identifier <223>.
SEQ ID NO:
(containing
Free text
free text)
under <223>
1
<223> Synthetic sequence
encoding FI6 heavy chain
<220>
<221> CDS
<222> (1)..(705)
<223> FI6 constant
3
<223> plasmid carrying FI6 and
1A6 antibodies
<220>
<221> polyA_signal
<222> (191)..(239)
<223> synthetic\polyA
<220>
<221> misc_feature
<222> (246)..(914)
<223> complement - CH′2-3
<220>
<221> misc_feature
<222> (915)..(1235)
<223> complement - CH′1
<220>
<221> misc_feature
<222> (1236)..(1598)
<223> complement - 1A6\VH
<220>
<221> misc_feature
<222> (1599)..(1655)
<223> complement - leader
<220>
<221> misc_feature
<222> (1734)..(2202)
<223> Enhancer
<220>
<221> misc_feature
<222> (2388)..(2444)
<223> leader
<220>
<221> CDS
<222> (2445)..(2777)
<223> FI6\VL
<220>
<221> misc_feature
<222> (3183)..(3242)
<223> leader
<220>
<221> CDS
<222> (3243)..(3629)
<223> FI6\VH
<220>
<221> CDS
<222> (3630)..(3950)
<223> CH1
<220>
<221> CDS
<222> (3951)..(4619)
<223> CH2-3
<220>
<221> polyA_signal
<222> (4626)..(4703)
<223> TKpAshort
<220>
<221> misc_feature
<222> (6995)..(7283)
<223> COL\E1 \ Origin
8
<223> Plasmid encoding FI6 and
C05 monoclonal antibodies
<220>
<221> polyA_signal
<222> (204)..(252)
<223> synthetic\polyA
<220>
<221> misc_feature
<222> (259)..(927)
<223> complement - CH′2-3
<220>
<221> misc_feature
<222> (928)..(1248)
<223> complement - CH′1
<220>
<221> misc_feature
<222> (1251)..(1668)
<223> complement - C05\VH
<220>
<221> misc_feature
<222> (1669)..(1719)
<223> complement - leader
<220>
<221> misc_feature
<222> (1729)..(1979)
<223> complement - CMV\mp2
<220>
<221> misc_feature
<222> (1798)..(2266)
<223> Enhancer
<220>
<221> misc_feature
<222> (2267)..(2392)
<223> CMV\mp2
<220>
<221> CDS
<222> (2509)..(2841)
<223> FI6\VL
<220>
<221> CDS
<222> (2842)..(3162)
<223> CL
<220>
<221> misc_feature
<222> (3247)..(3306)
<223> leader
<220>
<221> CDS
<222> (3307)..(3693)
<223> FI6\VH
<220>
<221> CDS
<222> (3694)..(4014)
<223> CH1
<220>
<221> CDS
<222> (4015)..(4683)
<223> CH2-3
<220>
<221> polyA_signal
<222> (4690)..(4767)
<223> TKpAshort
14
<223> Plasmid encoding synthetic
FI6 and 1A6 monoconals
<220>
<221> polyA_signal
<222> (191)..(239)
<223> synthetic\polyA
<220>
<221> misc_feature
<222> (246)..(914)
<223> complement - CH′2-3
<220>
<221> misc_feature
<222> (915)..(1235)
<223> complement - CH′1
<220>
<221> misc_feature
<222> (1236)..(1598)
<223> complement - 1A6\VH
<220>
<221> misc_feature
<222> (1599)..(1655)
<223> complement - leader
<220>
<221> misc_feature
<222> (1665)..(1733)
<223> complement - CMV\mp2
<220>
<221> misc_feature
<222> (1732)..(2202)
<223> Enhancer
<220>
<221> misc_feature
<222> (2203)..(2328)
<223> CMV\mp1
<220>
<221> misc_feature
<222> (2388)..(2444)
<223> leader
<220>
<221> misc_feature
<222> (2445)..(2789)
<223> KGL
<220>
<221> CDS
<222> (2784)..(3104)
<223> CL
<220>
<221> misc_feature
<222> (3189)..(3248)
<223> leader
<220>
<221> CDS
<222> (3249)..(3635)
<223> FI6\VH
<220>
<221> CDS
<222> (3636)..(3956)
<223> CH1
<220>
<221> CDS
<222> (3957)..(4625)
<223> CH2-3
<220>
<221> polyA_signal
<222> (4632)..(4709)
<223> TKpAshort
19
<223> Plasmid carrying FI6 and
CR8033 monoclonals
<220>
<221> polyA_signal
<222> (173)..(221)
<223> synthetic\polyA
<220>
<221> misc_feature
<222> (228)..(896)
<223> complement - CH′2-3
<220>
<221> misc_feature
<222> (897)..(1217)
<223> complement - CH′1
<220>
<221> misc_feature
<222> (1218)..(1604)
<223> complement - CR8033\VH
<220>
<221> misc_feature
<222> (1605)..(1655)
<223> complement - leader
<220>
<221> misc_feature
<222> (1665)..(1733)
<223> complement - CMV\mp2
<220>
<221> misc_feature
<222> (1734)..(2202)
<223> Enhancer
<220>
<221> misc_feature
<222> (2203)..(2328)
<223> CMV\mp1
<220>
<221> misc_feature
<222> (2445)..(2789)
<223> KGL
<220>
<221> CDS
<222> (2784)..(3104)
<223> CL
<220>
<221> misc_feature
<222> (3189)..(3248)
<223> leader
<220>
<221> CDS
<222> (3249)..(3635)
<223> FI6\VH
<220>
<221> CDS
<222> (3636)..(3956)
<223> CH1
<220>
<221> CDS
<222> (3957)..(4625)
<223> CH2-3
<220>
<221> misc_feature
<222> (3968)..(3968)
<223> A -> T
<220>
<221> polyA_signal
<222> (4632)..(4709)
<223> TKpAshort
24
<220>
<223> Plasmid carrying FI6 and
CR8033 monoclonal antibodies
<220>
<221> polyA_signal
<222> (191)..(239)
<223> synthetic polyA
<220>
<221> misc_feature
<222> (246)..(914)
<223> complement - CH′2-3
<220>
<221> misc_feature
<222> (915)..(1235)
<223> complement - CH′1
<220>
<221> misc_feature
<222> (1236)..(1622)
<223> complement - CR8033\VH
<220>
<221> misc_feature
<222> (1623)..(1673)
<223> complement - leader
<220>
<221> misc_feature
<222> (1683)..(1751)
<223> CMV\mp2
<220>
<221> misc_feature
<222> (1752)..(2220)
<223> Enhancer
<220>
<221> misc_feature
<222> (2221)..(2346)
<223> CMV\mp1
<220>
<221> misc_feature
<222> (2406)..(2462)
<223> leader
<220>
<221> CDS
<222> (2463)..(2795)
<223> FI6\VL
<220>
<221> CDS
<222> (2796)..(3116)
<223> CL
<220>
<221> misc_feature
<222> (3201)..(3260)
<223> leader
<220>
<221> CDS
<222> (3261)..(3647)
<223> FI6\VH
<220>
<221> CDS
<222> (3648)..(3968)
<223> CH1
<220>
<221> CDS
<222> (3969)..(4637)
<223> CH2-3
<220>
<221> misc_feature
<222> (3980)..(3980)
<223> A -> T
<220>
<221> polyA_signal
<222> (4644)..(4721)
<223> TKpAshort
30
<223> EcoRV
<220>
<221> polyA_signal
<222> (201)..(252)
<223> complement -
synthetic\polyA
<220>
<221> misc_feature
<222> (268)..(588)
<223> complement - CL
<220>
<221> misc_feature
<222> (589)..(909)
<223> complement - TCN032\VL
<220>
<221> polyA_signal
<222> (910)..(966)
<223> complement - leader
<220>
<221> misc_feature
<222> (1026)..(1094)
<223> complement - CMV\mp2
<220>
<221> misc_feature
<222> (1095)..(1563)
<223> Enhancer
<220>
<221> misc_feature
<222> (1564)..(1689)
<223> CMV\mp1
<220>
<221> misc_feature
<222> (1749)..(1805)
<223> leader
<220>
<221> CDS
<222> (1806)..(2165)
<223> TCN032\VH
<220>
<221> CDS
<222> (2166)..(2459)
<223> CH1
<220>
<221> misc_feature
<222> (2460)..(3152)
<223> hinge-CH2′-CH3′
<220>
<221> misc_feature
<222> (3239)..(3296)
<223> leader
<220>
<221> CDS
<222> (3297)..(3683)
<223> FI6\VH
<220>
<221> CDS
<222> (3684)..(4004)
<223> CH1
<220>
<221> CDS
<222> (4005)..(4673)
<223> CH2-3
<220>
<221> polyA_signal
<222> (4693)..(4770)
<223> TKpAshort
36
<223> FI6 and CO5
immunoadhesins
<220>
<221> polyA_signal
<222> (201)..(432)
<223> complement - SV40\polyA
<220>
<221> misc_feature
<222> (453)..(1121)
<223> complement - CH′2-3
<220>
<221> misc_feature
<222> (1125)..(1457)
<223> complement - C05\VL
<220>
<221> misc_feature
<222> (1458)..(1502)
<223> SL\from\3bn201co
<220>
<221> misc_feature
<222> (1503)..(1916)
<223> complement - C05\VH
<220>
<221> misc_feature
<222> (1965)..(1973)
<223> leader
<220>
<221> misc_feature
<222> (2371)..(2412)
<223> complement - CMV\mp2
<220>
<221> misc_feature
<222> (2413)..(2881)
<223> enhancer
<220>
<221> misc_feature
<222> (2882)..(3007)
<223> CMV\mp1
<220>
<221> misc_feature
<222> (3067)..(3055)
<223> leader
<220>
<221> CDS
<222> (3124)..(3510)
<223> FI6\VH
<220>
<221> misc_feature
<222> (3511)..(3555)
<223> SL\from\3bn201co
<220>
<221> CDS
<222> (3556)..(3888)
<223> FI6\VL
<220>
<221> CDS
<222> (3892)..(4560)
<223> CH2-3
<220>
<221> polyA_signal
<222> (4581)..(4812)
<223> SV40\polyA
40
<223> FI6 and CR8033
immunoadhesins
<220>
<221> polyA_signal
<222> (201)..(432)
<223> complement - SV40\polyA
<220>
<221> misc_feature
<222> (453)..(1121)
<223> complement - CH′2-3
<220>
<221> misc_feature
<222> (1125)..(1460)
<223> complement - 033\VL
<220>
<221> misc_feature
<222> (1461)..(1505)
<223> SL\from\3bn201co
<220>
<221> misc_feature
<222> (1506)..(1886)
<223> complement - 033\VH
<220>
<221> misc_feature
<222> (1935)..(1946)
<223> complement - leader
<220>
<221> misc_feature
<222> (2341)..(2382)
<223> complement - CMV\mp2
<220>
<221> misc_feature
<222> (2383)..(2851)
<223> enhancer
<220>
<221> misc_feature
<222> (2852)..(2977)
<223> CMV\mp1
<220>
<221> misc_feature
<222> (3073)..(3045)
<223> leader
<220>
<221> CDS
<222> (3094)..(3480)
<223> FI6\VH
<220>
<221> misc_feature
<222> (3481)..(3525)
<223> SL\from\3bn201co
<220>
<221> CDS
<222> (3526)..(3858)
<223> FI6\VL
<220>
<221> misc_feature
<222> (3862)..(4530)
<223> CH2-3
<220>
<221> polyA_signal
<222> (4551)..(4782)
<223> SV40\polyA
43
<223> Plasmid carrying TCN032
and Fi6 monoclonal antibodies
<220>
<221> repeat_region
<222> (14)..(143)
<220>
<221> polyA_signal
<222> (204)..(252)
<223> synthetic polyA
<220>
<221> misc_feature
<222> (261)..(267)
<223> stop cassette (complement)
<220>
<221> misc_feature
<222> (268)..(588)
<223> constant light (on
complementary strand)
<220>
<221> misc_feature
<222> (967)..(971)
<223> Kozak (located on
complementary strand)
<220>
<221> misc_feature
<222> (972)..(1019)
<223> c-myc 5′ UTR (located on
complementary strand)
<220>
<221> misc_feature
<222> (1026)..(1094)
<223> CMV\mp2
<220>
<221> enhancer
<222> (1026)..(1094)
<220>
<221> misc_feature
<222> (1564)..(1689)
<220>
<221> misc_feature
<222> (1696)..(1743)
<223> c-myc 5′ UTR
<220>
<221> misc_feature
<222> (1744)..(1748)
<223> Kozak
<220>
<221> misc_feature
<222> (1749)..(1805)
<223> leader
<220>
<221> CDS
<222> (1806)..(2165)
<223> TCN032 variable heavy
<220>
<221> repeat_region
<222> (1845)..(4974)
<223> inverted terminal repeat
<220>
<221> repeat_region
<222> (1845)..(4974)
<223> inverted terminal repeat
(located on complement)
<220>
<221> CDS
<222> (2166)..(2459)
<223> CH1
<220>
<221> misc
<222> (2166)..(2459)
<223> CH1
<220>
<221> CDS
<222> (2460)..(3152)
<223> hinge-CH2′-CH3′
<220>
<221> misc_feature
<222> (3153)..(3164)
<223> furin cleavage site
<220>
<221> misc_feature
<222> (3165)..(3236)
<223> F2A linker
<220>
<221> misc_feature
<222> (3239)..(3296)
<220>
<221> misc_feature
<222> (3239)..(3296)
<220>
<221> CDS
<222> (3297)..(3683)
<223> FI6 VH
<220>
<221> CDS
<222> (3684)..(4004)
<223> CH1
<220>
<221> CDS
<222> (4005)..(4673)
<223> CH2-3
<220>
<221> misc_feature
<222> (4674)..(4680)
<223> Stop cassette
<220>
<221> misc_feature
<222> (4674)..(4680)
<220>
<221> polyA_signal
<222> (4693)..(4770)
<223> TKpAshort
<220>
<221> rep_origin
<222> (5151)..(5606)
<220>
<221>CDS
<222> (5737)..(6594)
<223> Amp-R
<220>
<221> misc_feature
<222> (6768)..(.7356)
<223> col\El\origin
This application contains sequences and a sequence listing, which is hereby incorporated by reference. All publications, patents, and patent applications cited in this application, and U.S. Provisional Patent Application No. 61/992,649, filed May 13, 2014, the priority of which is claimed, are hereby incorporated by reference in their entireties as if each individual publication or patent application were specifically and individually indicated to be incorporated by reference. Although the foregoing invention has been described in some detail by way of illustration and example for purposes of clarity of understanding, it will be readily apparent to those of ordinary skill in the art in light of the teachings of this invention that certain changes and modifications can be made thereto without departing from the spirit or scope of the appended claims.
Wilson, James M., Tretiakova, Anna
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| Nov 09 2016 | WILSON, JAMES M | The Trustees of the University of Pennsylvania | ASSIGNMENT OF ASSIGNORS INTEREST SEE DOCUMENT FOR DETAILS | 047390 | /0810 | |
| Nov 17 2016 | TRETIAKOVA, ANNA | The Trustees of the University of Pennsylvania | ASSIGNMENT OF ASSIGNORS INTEREST SEE DOCUMENT FOR DETAILS | 047390 | /0810 | |
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