Anti-egfr family member antibodies and bispecific antibodies comprising one or more anti-egfr family member antibodies are disclosed. These antibodies can be used to advantage to specifically target forms of cancer associated with the overexpression of members of the egfr protein family.
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18. A host cell transfected with a nucleic acid that encodes an antibody comprising a heavy chain variable domain (VH) comprising the three VH CDRs of the F5B6H2 antibody and/or a light chain variable domain (VL) comprising the three VL CDRs of the F5B6H2 antibody.
1. An isolated antibody that binds to an egfr family member, wherein said antibody comprises a heavy chain variable domain (VH) comprising the three VH CDRs of the F5B6H2 antibody and/or a light chain variable domain (VL) comprising the three VL CDRs of the F5B6H2 antibody.
16. An isolated nucleic acid that encodes an isolated antibody that binds to an egfr family member, wherein said antibody comprises a heavy chain variable domain (VH) comprising the three VH CDRs of the F5B6H2 antibody and/or a light chain variable domain (VL) comprising the three VL CDRs of the F5B6H2 antibody.
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9. The antibody of
10. The antibody of
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12. The antibody of
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This application is a 371 National Phase of PCT/US2007/024287, filed on Nov. 20, 2007, which claims benefit of and priority to U.S. Ser. No. 60/860,750, filed on Nov. 21, 2006, and U.S. Ser. No. 60/867,015, filed on Nov. 22, 2006, all of which are incorporated herein by reference in their entirety for all purposes.
This work was supported in part by a Grant from the United States Army Medical Research and Material Command Breast Cancer Research Program, Grant No: DAMD 17-01-1-0520, and The United States National Cancer Institute, Institutional Pilot Grant No: NCI CA06927. The government of the United States of America may have certain rights in this invention.
The present invention relates to the fields of immunology and oncology, and more specifically, to monospecific or bispecific antibody molecules (e.g., bs scFv) that can be used to advantage in the detection and/or treatment of various cancers that overexpress the Epidermal Growth Factor Receptor (EGFR) family of proteins. Certain illustrative bispecific scFv antibody molecules of the invention have binding specificities for either two distinct epitopes of a single member of the EGFR family or alternatively specificity for two distinct members of the EGFR family.
The Epidermal Growth Factor Receptor (EGFR) signaling pathway plays an important role in the development and spread of cancer throughout the body. EGFR is expressed in a wide range of solid tumors, including colon cancers, head and neck cancers, pancreatic cancers, ovarian cancers, and breast cancers.
HER2/neu is a cell surface receptor protein with tyrosine kinase activity. The complete protein consists of three parts: an intracellular cytoplasmic domain, a short hydrophobic transmembrane segment and an extracellular domain (ECD) that is responsible for ligand binding. This receptor protein is expressed on the cell membrane of a variety of epithelial cell types and, through binding of specific growth factors, regulates various aspects of cell growth division.
Her2/neu, the gene that encodes for the HER2/neu protein, is a member of a group of genes known as proto-oncogenes. Proto-oncogenes encode important proteins, such as growth factors, growth factor receptors, and apoptotic proteins that are involved in normal cell growth and differentiation. When proto-oncogenes are altered by point mutation, translocation or gene amplification, they produce growth signals that may lead to aberrant cellular transformation and the development of cancer.
While Her2/neu can be expressed at low levels in many normal cells, it is typically overexpressed in a variety of cancers. Overexpression of Her2/neu is caused in most cases by an increase in copy number of the gene (gene amplification) and/or by an increase in expression level of the Her2/neu genes in the cell. Overexpression of this growth factor receptor plays a key role in tumor progression by causing a higher rate of cell growth and oncogenic transformation. Gene amplification of the Her2/neu gene has been observed in a variety of cancer types, including, breast, ovarian, endometrial, gastric, pancreatic, prostate and salivary gland (Hynes and Stern (1994) Biochim Biophys Acta., 1198: 165-184). In breast cancer patients, HER2/neu has also been shown to be of clinical importance as it is associated with poor prognosis, tumor recurrence and shortened survival in breast cancer patients (Seshadri et al. (1993) J. Clin. Oncol., 11: 1936-1942; Berger et al. (1988) Cancer Res., 48: 1238-1243; O'Reilly et al. (1991) Br. J. Cancer, 63: 444-446).
Currently, a great deal of attention has focused on the development of novel immunotherapy strategies for the treatment of cancer. One such strategy is antibody-based cancer therapy. A major goal of antibody-based cancer therapy is to specifically deliver toxic payloads such as radioisotopes, toxins or drugs to tumors. The size range of antibody binding site-based molecules includes: IgM (1000 kDa), IgG (150 kDa), F(ab′)2 (100 kDa), Fab (50 kDa), (scFv)2 (55 kDa) and scFv (25 kDa). In immunodeficient mice, larger molecules such as IgG and F(ab)2 fragments are retained at high levels in human tumor xenografts with a low degree of specificity (Adams et al. (1992) Antibody, Immunoconj. Radiopharm., 5: 81-95; Milenic et al. (1991) J. Cancer Res. 51: 6363-6371), while smaller molecules such as scFv, (scFv)2 and Fab are retained in tumors at comparatively lower levels with greatly improved specificity (Milenic et al. (1991) J. Cancer Res. 51: 6363-6371; Adams et al. (1993) Cancer Res. 53: 4026-4034; Beaumier et al. (1985) J. Nucl. Med. 26: 1172-1179; Colcher et al. (1990) J. Natl. Cancer Inst. 82: 1191-1197).
The most prominent determinant of the above targeting properties is the size of the antibody-based molecule relative to the renal threshold for first pass clearance. Another important feature of antibody-based molecules is valence, as significantly greater tumor retention has been associated with multivalent binding to target antigen (Milenic et al. (1991) J. Cancer Res. 51: 6363-6371; Adams et al. (1993) Cancer Res. 53: 4026-4034; Adams et al. (1996) Proc. Amer. Assoc. Cancer Res. 37: 472; Wolf et al. (1993) Cancer Res. 53: 2560-2565).
Herceptin, a new form of immunotherapy targeting breast cancer, was recently developed to target cancer cells that overexpress Her2/neu. This treatment has been shown in clinical trials to provide effective treatment for patients with HER2/neu positive metastatic breast cancer. However, this drug treatment is costly and is associated with significant morbidity and mortality.
Several other types of therapy have been shown to be more or less effective in breast cancer patients whose tumors express elevated levels of Her2/neu. These include, anthracycline therapy which is thought to be more effective in patients with amplified Her2/neu expression, and hormonal therapy which is less effective in patients whose level of Her2/neu expression is high.
Attention has also focused upon the generation of bivalent single chain Fv-based antibody molecules with molecular weights in the range of the renal threshold for first pass clearance. These include 50 kDa diabodies (Holliger et al. (1993) Proc. Natl. Acad. Sci. USA, 90: 6444-6448), 55 kDa (scFv)2 (Adams et al. (1993) Cancer Res. 53: 4026-4034), 60-65 kDa amphipathic helix-based scFv dimers (Pack et al. (1993) Bio/Technology 11: 1271-1277; Pack (1992) Biochemistry 31: 1579-1584), and 80 kDa (scFv-CH3)2 LD minibodies and Flex minibodies (Hu et al. (1996) Cancer Res. 56: 3055-3061). While each of these proteins is capable of binding two antigen molecules, they differ in the orientation, flexibility and the span of their binding sites. It is believed that these new and innovative immunotherapies will help improve outcomes in breast and other cancers that too frequently recur or progress despite aggressive multi-modality therapy.
This invention pertains to the identification of novel antibodies that bind to members of the Epidermal Growth Factor Receptor (EGFR-family/ErbB-family) of proteins and that can be used to advantage in the detection and/or treatment of various cancers that overexpress the Epidermal Growth Factor Receptor (EGFR-family/ErbB-family) of proteins. In various embodiments the antibodies themselves can be contacted to such neoplastic cells whereby they inhibit growth and/or proliferation of such cells. Alternatively, the antibodies can be attached to an effector (e.g., detectable label, a cytotoxin, an epitope tag, a second antibody, etc.) whereby the effector can act to inhibit growth and/or proliferation of the target cells or can be used to detect and/or visualize the cells. In certain embodiments the effector is a second antibody thereby forming a bispecific antibody.
Accordingly, in one embodiment this invention provides a bispecific antibody comprising an first antibody and a second antibody joined (directly or through a linker) to each other where the first antibody and the second antibody bind specifically to different epitopes and the first antibody has binding specificity for (specifically binds) at least one epitope on a member of the EbrB/EGFR protein family, (e.g., EGFR, HER2/neu, HER3, HER4), and the second antibody has binding specificity for (specifically binds) a second epitope on a member of the EbrB/EGFR protein family which is different from the first epitope. In certain embodiments the second antibody binds an epitope on a protein selected from the group consisting of EGFR, HER2/neu, HER3 and HER4. In certain embodiments, the antibodies are joined by a linker, more preferably by a peptide linker, and most preferably by a peptide linker that lacks a proteolytic cleavage site (e.g., a linker having the amino acid sequence of SEQ ID NO:273).
In certain embodiments, the first and/or the second antibody specifically binds an epitope specifically bound by an antibody selected from the group consisting of C6.5, C6ML3-9, C6 MH3-B1, C6-B1D2, F5, HER3.A5, HER3.F4, HER3.H1, HER3.H3, HER3.E12, HER3.B12, EGFR.E12, EGFR.C10, EGFR.1C10, EGFR.B11, EGFR.E8, HER4.B4, HER4.G4, HER4.F4, HER4.A8, HER4.B6, HER4.D4, HER4.D7, HER4.D11, HER4.D12, HER4.E3, HER4.E7, HER4.F8, F5B6H2, and HER4.C7.
In certain embodiments a composition is provided comprising an isolated antibody that binds to an EbrB/EGFR family member, where the antibody comprises a heavy chain variable domain (VH) comprising the three VH CDRs of the A5 antibody and/or a light chain variable domain (VL) comprising the three VL CDRs of the A5 antibody. In certain embodiments the antibody comprises a heavy chain variable domain (VH) of the A5 antibody and/or a light chain variable domain (VL) of the A5 antibody. In certain embodiments the antibody comprises a heavy chain variable domain (VH) comprising the three VH CDRs of the A5 antibody and a light chain variable domain (VL) comprising the three VL CDRs of the A5 antibody. In certain embodiments the antibody comprises a heavy chain variable domain (VH) of the A5 antibody and a light chain variable domain (VL) of the A5 antibody.
In certain embodiments a composition is provided comprising an isolated antibody that binds to an EbrB/EGFR family member, where the antibody comprises a heavy chain variable domain (VH) comprising the three VH CDRs of the F5B6H2 antibody and/or a light chain variable domain (VL) comprising the three VL CDRs of the F5B6H2 antibody. In certain embodiments the antibody comprises a heavy chain variable domain (VH) of the F5B6H2 antibody and/or a light chain variable domain (VL) of the F5B6H2 antibody. In certain embodiments the antibody comprises a heavy chain variable domain (VH) comprising the three VH CDRs of the F5B6H2 antibody and a light chain variable domain (VL) comprising the three VL CDRs of the F5B6H2 antibody. In certain embodiments the antibody comprises a heavy chain variable domain (VH) of the F5B6H2 antibody and a light chain variable domain (VL) of the F5B6H2 antibody. In various embodiments the antibodies described herein can include an scFv, an IgG, a Fab, an (Fab′)2, and an (scFv′)2. In various embodiments any of the antibodies described herein can be coupled to an effector (e.g., a cytotoxin, a label, a a second antibody). In certain embodiments the effector comprises a second antibody, where the second antibody comprises a heavy chain variable domain (VH) comprising the three VH CDRs and/or a light chain variable domain (VL) comprising the three VL CDRs of an antibody selected from the group consisting of A5, F5B6H2, C6.5, C6-B1D2, C6 MH3-B1, C6ML3-9, EGFR.B11, EGFR.C10, EGFR.1C10, EGFR.E12, EGFR.E8, F5, HER3.B12, HER3.E12, HER3.F4, HER3.H1, HER3.H3, HER4.B6, HER4.E3, and G98A. In certain embodiments the second antibody comprises a heavy chain variable domain (VH) comprising the three VH CDRs and a light chain variable domain (VL) comprising the three VL CDRs of an antibody selected from the group consisting of A5, F5B6H2, C6.5, C6-B1D2, C6 MH3-B1, C6ML3-9, EGFR.B11, EGFR.C10, EGFR.1C10, EGFR.E12, EGFR.E8, F5, HER3.B12, HER3.E12, HER3.F4, HER3.H1, HER3.H3, HER4.B6, HER4.E3, and G98A. In certain embodiments the second antibody comprises a heavy chain variable domain (VH) and/or a light chain variable domain (VL) of an antibody selected from the group consisting of A5, F5B6H2, C6.5, C6-B1D2, C6 MH3-B1, C6ML3-9, EGFR.B11, EGFR.C10, EGFR.1C10, EGFR.E12, EGFR.E8, F5, HER3.B12, HER3.E12, HER3.F4, HER3.H1, HER3.H3, HER4.B6, HER4.E3, and G98A. In certain embodiments the second antibody comprises a heavy chain variable domain (VH) and a light chain variable domain (VL) of an antibody selected from the group consisting of A5, F5B6H2, C6.5, C6-B1D2, C6 MH3-B1, C6ML3-9, EGFR.B11, EGFR.C10, EGFR.1C10, EGFR.E12, EGFR.E8, F5, HER3.B12, HER3.E12, HER3.F4, HER3.H1, HER3.H3, HER4.B6, HER4.E3, and G98A. In various embodiments the second antibody is joined to the first antibody by a linker (e.g., a peptide linker). In various embodiments the linker is a peptide linker that lacks a proteolytic cleavage site. In various embodiments the composition further comprises a pharmaceutically acceptable excipient.
Also provided are methods of inhibiting the growth and/or proliferation of a cancer cell. The methods typically involve contacting the cancer cell with an antibody as described herein (e.g., an antibody comprising the VH and/or VL CDRs of A5 and/or F5B6H2). In certain embodiments the antibody is further attached to an effector (e.g., a cytotoxin, an antibody, etc.) as described herein. For example, in certain embodiments the second antibody comprises a heavy chain variable domain (VH) comprising the three VH CDRs and/or a light chain variable domain (VL) comprising the three VL CDRs of an antibody selected from the group consisting of A5; F5B6H2, C6.5, C6-B1D2, C6 MH3-B1, C6ML3-9, EGFR.B11, EGFR.C10, EGFR.1C10, EGFR.E12, EGFR.E8, F5, HER3.B12, HER3.E12, HER3.F4, HER3.H1, HER3.H3, HER4.B6, HER4.E3, and G98A. In certain embodiments the second antibody is joined to the first antibody by a linker (e.g., a peptide linker). In certain embodiments the cancer cell is from a cancer selected from the group consisting of breast, colon, ovarian, endometrial, gastric, pancreatic, prostate, and salivary gland cancer.
In certain embodiments methods of specifically or preferentially delivering an effector molecule to a cell bearing a receptor from the EGFR/ErbB protein family. The methods typically involve providing a chimeric moiety comprising the effector molecule attached to one or more of the antibodies described herein that bind to a member of the EGFR/ErbB protein family (e.g., an antibody that comprises a heavy chain variable domain (VH) comprising the three VH CDRs of the A5 antibody and/or a light chain variable domain (VL) comprising the three VL CDRs of the A5 or F5B6H2 antibody); and contacting the cell with the chimeric moiety, whereby the chimeric moiety specifically binds to the cell. In various embodiments the effector is selected from the group consisting of a cytotoxin, a label, a radionuclide, a drug, a liposome, a ligand, and an antibody. In certain embodiments the chimeric moiety is a fusion protein or a chemical conjugate. In certain embodiments the cell is a cell of a cancer selected from the group consisting of breast cancer, colon cancer, ovarian cancer, endometrial cancer, gastric cancer, pancreatic cancer, prostate cancer, salivary gland cancer, etc. In certain embodiments the “contacting” comprises administration to an organism by a route selected from the group consisting of oral administration, rectal administration, intravenous injection, intramuscular injection, injection into a tumor mass, administration to a surgical site, and the like.
Methods are also provided for specifically killing a cell bearing a receptor from EGFR/ErbB protein family. The methods typically involve providing a chimeric moiety comprising an antibody attached to an effector selected from the group consisting of a cytotoxin, a radioactive moiety, and a liposome comprising a cytotoxic or cytostatic agent, where the antibody comprises one or more of the antibodies described herein (e.g., an antibody comprising a heavy chain variable domain (VH) comprising the three VH CDRs of the A5 or the F5B6H2 antibody and/or a light chain variable domain (VL) comprising the three VL CDRs of the A5 or the F5B6H2 antibody; and contacting the cell with the chimeric moiety, whereby the chimeric moiety specifically binds to the cell resulting in the death of the cell. In certain embodiments the chimeric moiety is a fusion protein or a chemical conjugate. In certain embodiments the cell is a cell of a cancer selected from the group consisting of breast cancer, colon cancer, ovarian cancer, endometrial cancer, gastric cancer, pancreatic cancer, prostate cancer, salivary gland cancer, etc. In certain embodiments the “contacting” comprises administration to an organism by a route selected from the group consisting of oral administration, rectal administration, intravenous injection, intramuscular injection, injection into a tumor mass, administration to a surgical site, and the like.
Methods of detecting a cell or tissue expressing one or more members of the EGFR/ErbB protein family are also provided. These methods typically involve contacting a cell or tissue with a chimeric moiety comprising a detectable label attached to one or more of the antibodies described herein (e.g., an antibody comprising a heavy chain variable domain (VH) comprising the three VH CDRs of the A5 or the F5B6H2 antibody and/or a light chain variable domain (VL) comprising the three VL CDRs of the A5 or the F5B6H2 antibody; and detecting the label where detection of the label in association with the cell or tissue indicates the presence of a cell or tissue expressing one or more members of the EGFR/ErbB protein family. In certain embodiments the detectable label is selected from the group consisting of a gamma emitter, a positron emitter, an MRI label, and a fluorescent label. In certain embodiments the detectable label comprises a gamma emitter and the detecting comprises imaging with a gamma camera. In certain embodiments the detectable label comprises a positron emitter and the detecting comprises imaging with positron emission tomography (PET). In certain embodiments the detectable label comprises an MRI label and the detecting comprises detecting with magnetic resonance imaging. In certain embodiments the cell or tissue expressing one or more members of the Epidermal Growth Factor Receptor Protein family is a cancer cell or tissue. In certain embodiments the cell or tissue expressing one or more members of the EGFR/ErbB protein family comprises a cancer cell (e.g., a cell of a breast cancer, a colon cancer, an ovarian cancer, an endometrial cancer, a gastric cancer, a pancreatic cancer, a prostate cancer, a salivary gland cancer, etc.). In certain embodiments the detecting comprises a non-invasive imaging technique. In certain embodiments the detecting comprises immunohistochemistry. In certain embodiments the detecting comprises detecting in a tissue sample or biopsy. In certain embodiments the detecting comprises detecting in a tissue section. In certain embodiments the detecting comprises detecting the cell or tissue in a human. In certain embodiments the detecting comprises detecting the cell or tissue in a biological sample taken from a human
Also provided are nucleic acids that encode any of the antibodies described herein, or any of the fusion proteins (e.g., bispecific antibodies) described herein. For example, nucleic acids are provided that encode an antibody comprising a heavy chain variable domain (VH) comprising the three VH CDRs of the A5 or F5B6H2 antibody and/or a light chain variable domain (VL) comprising the three VL CDRs of the A5 or F5B6H2 antibody. In certain embodiments the nucleic acid further encodes a second antibody attached the isolated antibody. Also provide are vectors (e.g., plasmid, cosmid, phage, virus, etc.) comprising the nucleic acid(s) endogin the isolated antibody and/or bispecific antibodies and/or other antibody fusion proteins.
In certain embodiments host cells are provided where the host cells are cells transfected with a nucleic acid that encodes one or more of the antibodies described herein and/or one or more of the fusion proteins (e.g., bispecific antibodies) described herein. For example in certain embodiments the host cellsa are transfected with a nucleic acid that encodes an antibody comprising a heavy chain variable domain (VH) comprising the three VH CDRs of the A5 or F6B6H2 antibody and/or a light chain variable domain (VL) comprising the three VL CDRs of the A5 or F6B6H2 antibody.
The “ErbB family” and “Epidermal Growth Factor (EFG) family)” are used interchangeably and include EGFR/ErbB1/HER1, ErbB2/Neu/HER2, ErbB3/HER3, and ErbB4/HER4.
The terms “polypeptide”, “peptide” and “protein” are used interchangeably herein to refer to a polymer of amino acid residues. The terms apply to amino acid polymers in which one or more amino acid residue is an artificial chemical analogue of a corresponding naturally occurring amino acid, as well as to naturally occurring amino acid polymers. The term also includes variants on the traditional peptide linkage joining the amino acids making up the polypeptide. Preferred “peptides”, “polypeptides”, and “proteins” are chains of amino acids whose a carbons are linked through peptide bonds. The terminal amino acid at one end of the chain (amino terminal) therefore has a free amino group, while the terminal amino acid at the other end of the chain (carboxy terminal) has a free carboxyl group. As used herein, the term “amino terminus” (abbreviated N-terminus) refers to the free α-amino group on an amino acid at the amino terminal of a peptide or to the α-amino group (imino group when participating in a peptide bond) of an amino acid at any other location within the peptide. Similarly, the term “carboxy terminus” refers to the free carboxyl group on the carboxy terminus of a peptide or the carboxyl group of an amino acid at any other location within the peptide. Peptides also include essentially any polyamino acid including, but not limited to peptide mimetics such as amino acids joined by an ether as opposed to an amide bond.
As used herein, an “antibody” refers to a protein consisting of one or more polypeptides substantially encoded by immunoglobulin genes or fragments of immunoglobulin genes. The recognized immunoglobulin genes include the kappa, lambda, alpha, gamma, delta, epsilon and mu constant region genes, as well as myriad immunoglobulin variable region genes. Light chains are classified as either kappa or lambda. Heavy chains are classified as gamma, mu, alpha, delta, or epsilon, which in turn define the immunoglobulin classes, IgG, IgM, IgA, IgD and IgE, respectively.
A typical immunoglobulin (antibody) structural unit is known to comprise a tetramer. Each tetramer is composed of two identical pairs of polypeptide chains, each pair having one “light” (about 25 kD) and one “heavy” chain (about 50-70 kD). The N-terminus of each chain defines a variable region of about 100 to 110 or more amino acids primarily responsible for antigen recognition. The terms variable light chain (VL) and variable heavy chain (VH) refer to these light and heavy chains respectively.
Antibodies exist as intact immunoglobulins or as a number of well-characterized fragments produced by digestion with various peptidases. Thus, for example, pepsin digests an antibody below the disulfide linkages in the hinge region to produce F(ab)′2, a dimer of Fab which itself is a light chain joined to VH-CH1 by a disulfide bond. The F(ab)′2 may be reduced under mild conditions to break the disulfide linkage in the hinge region thereby converting the (Fab′)2 dimer into a Fab′ monomer. The Fab′ monomer is essentially a Fab with part of the hinge region (see, Fundamental Immunology, W. E. Paul, ed., Raven Press, N.Y. (1993), for a more detailed description of other antibody fragments). While various antibody fragments are defined in terms of the digestion of an intact antibody, one of skill will appreciate that such Fab′ fragments may be synthesized de novo either chemically or by utilizing recombinant DNA methodology. Thus, the term antibody, as used herein also includes whole antibodies, antibody fragments either produced by the modification of whole antibodies or synthesized de novo using recombinant DNA methodologies. Preferred antibodies include single chain antibodies (antibodies that exist as a single polypeptide chain), more preferably single chain Fv antibodies (scFv) in which a variable heavy and a variable light chain are joined together (directly or through a peptide linker) to form a continuous polypeptide. The single chain Fv antibody is a covalently linked VH-VL heterodimer which may be expressed from a nucleic acid including VH- and VL-encoding sequences either joined directly or joined by a peptide-encoding linker. Huston, et al. (1988) Proc. Nat. Acad. Sci. USA, 85: 5879-5883. While the VH and VL are connected to each as a single polypeptide chain, the VH and VL domains associate non-covalently. The first functional antibody molecules to be expressed on the surface of filamentous phage were single-chain Fv's (scFv), however, alternative expression strategies have also been successful. For example Fab molecules can be displayed on phage if one of the chains (heavy or light) is fused to g3 capsid protein and the complementary chain exported to the periplasm as a soluble molecule. The two chains can be encoded on the same or on different replicons; the important point is that the two antibody chains in each Fab molecule assemble post-translationally and the dimer is incorporated into the phage particle via linkage of one of the chains to, e.g., g3p (see, e.g., U.S. Pat. No. 5,733,743). The scFv antibodies and a number of other structures converting the naturally aggregated, but chemically separated light and heavy polypeptide chains from an antibody V region into a molecule that folds into a three dimensional structure substantially similar to the structure of an antigen-binding site are known to those of skill in the art (see e.g., U.S. Pat. Nos. 5,091,513, 5,132,405, and 4,956,778). Particularly preferred antibodies should include all that have been displayed on phage (e.g., scFv, Fv, Fab and disulfide linked Fv (Reiter et al. (1995) Protein Eng. 8: 1323-1331), and in addition to monospecific antibodies, also include bispecific, trispecific, quadraspecific, and generally polyspecific antibodies (e.g., bs scFv).
With respect to antibodies of the invention, the term “immunologically specific” “specifically binds” refers to antibodies that bind to one or more epitopes of a protein of interest (e.g., HER2/neu), but which do not substantially recognize and bind other molecules in a sample containing a mixed population of antigenic biological molecules.
The term “bispecific antibody” as used herein refers to an antibody comprising two antigen-binding sites, a first binding site having affinity for a first antigen or epitope and a second binding site having binding affinity for a second antigen or epitope distinct from the first.
The terms “nucleic acid” or “oligonucleotide” or grammatical equivalents herein refer to at least two nucleotides covalently linked together. A nucleic acid of the present invention is preferably single-stranded or double stranded and will generally contain phosphodiester bonds, although in some cases, as outlined below, nucleic acid analogs are included that may have alternate backbones, comprising, for example, phosphoramide (Beaucage et al. (1993) Tetrahedron 49(10):1925) and references therein; Letsinger (1970) J. Org. Chem. 35:3800; Sprinzl et al. (1977) Eur. J. Biochem. 81: 579; Letsinger et al. (1986) Nucl. Acids Res. 14: 3487; Sawai et al. (1984) Chem. Lett. 805, Letsinger et al. (1988) J. Am. Chem. Soc. 110: 4470; and Pauwels et al. (1986) Chemica Scripta 26: 141 9), phosphorothioate (Mag et al. (1991) Nucleic Acids Res. 19:1437; and U.S. Pat. No. 5,644,048), phosphorodithioate (Briu et al. (1989) J. Am. Chem. Soc. 111:2321, O-methylphophoroamidite linkages (see Eckstein, Oligonucleotides and Analogues: A Practical Approach, Oxford University Press), and peptide nucleic acid backbones and linkages (see Egholm (1992) J. Am. Chem. Soc. 114:1895; Meier et al. (1992) Chem. Int. Ed. Engl. 31: 1008; Nielsen (1993) Nature, 365: 566; Carlsson et al. (1996) Nature 380: 207). Other analog nucleic acids include those with positive backbones (Denpcy et al. (1995) Proc. Natl. Acad. Sci. USA 92: 6097; non-ionic backbones (U.S. Pat. Nos. 5,386,023, 5,637,684, 5,602,240, 5,216,141 and 4,469,863; Angew. (1991) Chem. Intl. Ed. English 30: 423; Letsinger et al. (1988) J. Am. Chem. Soc. 110:4470; Letsinger et al. (1994) Nucleoside & Nucleotide 13:1597; Chapters 2 and 3, ASC Symposium Series 580, “Carbohydrate Modifications in Antisense Research”, Ed. Y. S. Sanghui and P. Dan Cook; Mesmaeker et al. (1994), Bioorganic & Medicinal Chem. Lett. 4: 395; Jeffs et al. (1994) J. Biomolecular NMR 34:17; Tetrahedron Lett 37:743 (1996)) and non-ribose backbones, including those described in U.S. Pat. Nos. 5,235,033 and 5,034,506, and Chapters 6 and 7, ASC Symposium Series 580, Carbohydrate Modifications in Antisense Research, Ed. Y. S. Sanghui and P. Dan Cook. Nucleic acids containing one or more carbocyclic sugars are also included within the definition of nucleic acids (see Jenkins et al. (1995), Chem. Soc. Rev. pp 169-176). Several nucleic acid analogs are described in Rawls, C & E News Jun. 2, 1997 page 35. These modifications of the ribose-phosphate backbone may be done to facilitate the addition of additional moieties such as labels, or to increase the stability and half-life of such molecules in physiological environments.
The terms “hybridizing specifically to” and “specific hybridization” and “selectively hybridize to,” as used herein refer to the binding, duplexing, or hybridizing of a nucleic acid molecule preferentially to a particular nucleotide sequence under stringent conditions. The term “stringent conditions” refers to conditions under which a probe will hybridize preferentially to its target subsequence, and to a lesser extent to, or not at all to, other sequences. Stringent hybridization and stringent hybridization wash conditions in the context of nucleic acid hybridization are sequence dependent, and are different under different environmental parameters. An extensive guide to the hybridization of nucleic acids is found in, e.g., Tijssen (1993) Laboratory Techniques in Biochemistry and Molecular Biology—Hybridization with Nucleic Acid Probes part I, chapt 2, Overview of principles of hybridization and the strategy of nucleic acid probe assays, Elsevier, N.Y. (Tijssen). Generally, highly stringent hybridization and wash conditions are selected to be about 5° C. lower than the thermal melting point (Tm) for the specific sequence at a defined ionic strength and pH. The Tm is the temperature (under defined ionic strength and pH) at which 50% of the target sequence hybridizes to a perfectly matched probe. Very stringent conditions are selected to be equal to the Tm, for a particular probe. An example of stringent hybridization conditions for hybridization of complementary nucleic acids which have more than 100 complementary residues on an array or on a filter in a Southern or northern blot is 42° C. using standard hybridization solutions (see, e.g., Sambrook (1989) Molecular Cloning: A Laboratory Manual (2nd ed.) Vol. 1-3, Cold Spring Harbor Laboratory, Cold Spring Harbor Press, NY, and detailed discussion, below), with the hybridization being carried out overnight. An example of highly stringent wash conditions is 0.15 M NaCl at 72° C. for about 15 minutes. An example of stringent wash conditions is a 0.2×SSC wash at 65° C. for 15 minutes (see, e.g., Sambrook supra.) for a description of SSC buffer). Often, a high stringency wash is preceded by a low stringency wash to remove background probe signal. An example medium stringency wash for a duplex of, e.g., more than 100 nucleotides, is 1×SSC at 45° C. for 15 minutes. An example of a low stringency wash for a duplex of, e.g., more than 100 nucleotides, is 4× to 6×SSC at 40° C. for 15 minutes.
When applied to RNA, the term “isolated nucleic acid” refers primarily to an RNA molecule encoded by an isolated DNA molecule as defined above. Alternatively, the term may refer to an RNA molecule that has been sufficiently separated from other nucleic acids with which it would be associated in its natural state (i.e., in cells or tissues). An “isolated nucleic acid” (either DNA or RNA) may further represent a molecule produced directly by biological or synthetic means and separated from other components present during its production.
A “replicon” is any genetic element, for example, a plasmid, cosmid, bacmid, plastid, phage or virus, that is capable of replication largely under its own control. A replicon may be either RNA or DNA and may be single or double stranded.
A “vector” is a replicon, such as a plasmid, cosmid, bacmid, phage or virus, to which another genetic sequence or element (either DNA or RNA) may be attached so as to bring about the replication of the attached sequence or element.
An “expression operon” refers to a nucleic acid segment that may possess transcriptional and translational control sequences, such as promoters, enhancers, translational start signals (e.g., ATG or AUG codons), polyadenylation signals, terminators, and the like, and which facilitate the expression of a polypeptide coding sequence in a host cell or organism.
The term “primer” as used herein refers to an oligonucleotide, either RNA or DNA, either single-stranded or double-stranded, either derived from a biological system, generated by restriction enzyme digestion, or produced synthetically which, when placed in the proper environment, is able to functionally act as an initiator of template-dependent nucleic acid synthesis. When presented with an appropriate nucleic acid template, suitable nucleoside triphosphate precursors of nucleic acids, a polymerase enzyme, suitable cofactors and conditions such as appropriate temperature and pH, the primer can be extended at its 3′ terminus by the addition of nucleotides by the action of a polymerase or similar activity to yield a primer extension product. The primer can vary in length depending on the particular conditions and requirement of the application. Often primers range from about 15 to about 25 or more nucleotides in length. The primer are typically of sufficient complementarity to the desired template to prime the synthesis of the desired extension product. In other words, the primers are able to anneal with the desired template strand in a manner sufficient to provide the 3′ hydroxyl moiety of the primer in appropriate juxtaposition for use in the initiation of synthesis by a polymerase or similar enzyme. It is not required that the primer sequence represent an exact complement of the desired template. For example, a non-complementary nucleotide sequence may be attached to the 5′ end of an otherwise complementary primer. Alternatively, non-complementary bases can be interspersed within the oligonucleotide primer sequence, provided that the primer sequence has sufficient complementarity with the sequence of the desired template strand to functionally provide a template-primer complex for the synthesis of the extension product.
Polymerase chain reaction (PCR) has been described in U.S. Pat. Nos. 4,683,195, 4,800,195, and 4,965,188, the entire disclosures of which are incorporated by reference herein.
As used herein, the terms “reporter,” “reporter system”, “reporter gene,” or “reporter gene product” shall mean an operative genetic system in which a nucleic acid comprises a gene that encodes a product that when expressed produces a reporter signal that is a readily measurable, e.g., by biological assay, immunoassay, radio immunoassay, or by colorimetric, fluorogenic, chemiluminescent or other methods. The nucleic acid can be either RNA or DNA, linear or circular, single or double stranded, antisense or sense polarity, and is operatively linked to the necessary control elements for the expression of the reporter gene product. The control elements will vary according to the nature of the reporter system and whether the reporter gene is in the form of DNA or RNA, but may include, but not be limited to, such elements as promoters, enhancers, translational control sequences, poly A addition signals, transcriptional termination signals and the like.
The terms “transform”, “transfect”, “transduce”, shall refer to any method or means by which a nucleic acid is introduced into a cell or host organism and may be used interchangeably to convey the same meaning. Such methods include, but are not limited to, transfection, electroporation, microinjection, PEG-fusion and the like. The introduced nucleic acid may or may not be integrated (covalently linked) into nucleic acid of the recipient cell or organism. In bacterial, yeast, plant and mammalian cells, for example, the introduced nucleic acid may be maintained as an episomal element or independent replicon such as a plasmid. Alternatively, the introduced nucleic acid may become integrated into the nucleic acid of the recipient cell or organism and be stably maintained in that cell or organism and further passed on or inherited to progeny cells or organisms of the recipient cell or organism. Finally, the introduced nucleic acid may exist in the recipient cell or host organism only transiently.
The term “selectable marker gene” refers to a gene that when expressed confers a selectable phenotype, such as antibiotic resistance, on a transformed cell or plant.
The term “operably linked” means that the regulatory sequences necessary for expression of the coding sequence are placed in the DNA molecule in the appropriate positions relative to the coding sequence so as to effect expression of the coding sequence. This same definition is sometimes applied to the arrangement of transcription units and other transcription control elements (e.g., enhancers) in an expression vector.
The terms “identical” or percent “identity,” in the context of two or more nucleic acids or polypeptide sequences, refer to two or more sequences or subsequences that are the same or have a specified percentage of amino acid residues or nucleotides that are the same, when compared and aligned for maximum correspondence, as measured using one of the following sequence comparison algorithms or by visual inspection. With respect to the peptides of this invention sequence identity is determined over the full length of the peptide.
For sequence comparison, typically one sequence acts as a reference sequence, to which test sequences are compared. When using a sequence comparison algorithm, test and reference sequences are input into a computer, subsequence coordinates are designated, if necessary, and sequence algorithm program parameters are designated. The sequence comparison algorithm then calculates the percent sequence identity for the test sequence(s) relative to the reference sequence, based on the designated program parameters.
Optimal alignment of sequences for comparison can be conducted, e.g., by the local homology algorithm of Smith & Waterman, Adv. Appl. Math. 2:482 (1981), by the homology alignment algorithm of Needleman & Wunsch, J. Mol. Biol. 48:443 (1970), by the search for similarity method of Pearson & Lipman (1988) Proc. Natl. Acad. Sci. USA 85:2444, by computerized implementations of these algorithms (GAP, BESTFIT, FASTA, and TFASTA in the Wisconsin Genetics Software Package, Genetics Computer Group, 575 Science Dr., Madison, Wis.), or by visual inspection (see generally Ausubel et al., supra).
One example of a useful algorithm is PILEUP. PILEUP creates a multiple sequence alignment from a group of related sequences using progressive, pairwise alignments to show relationship and percent sequence identity. It also plots a tree or dendrogram showing the clustering relationships used to create the alignment. PILEUP uses a simplification of the progressive alignment method of Feng & Doolittle (1987) J. Mol. Evol. 35:351-360. The method used is similar to the method described by Higgins & Sharp (1989) CABIOS 5: 151-153. The program can align up to 300 sequences, each of a maximum length of 5,000 nucleotides or amino acids. The multiple alignment procedure begins with the pairwise alignment of the two most similar sequences, producing a cluster of two aligned sequences. This cluster is then aligned to the next most related sequence or cluster of aligned sequences. Two clusters of sequences are aligned by a simple extension of the pairwise alignment of two individual sequences. The final alignment is achieved by a series of progressive, pairwise alignments. The program is run by designating specific sequences and their amino acid or nucleotide coordinates for regions of sequence comparison and by designating the program parameters. For example, a reference sequence can be compared to other test sequences to determine the percent sequence identity relationship using the following parameters: default gap weight (3.00), default gap length weight (0.10), and weighted end gaps.
Another example of algorithm that is suitable for determining percent sequence identity and sequence similarity is the BLAST algorithm, which is described in Altschul et al. (1990) J. Mol. Biol. 215: 403-410. Software for performing BLAST analyses is publicly available through the National Center for Biotechnology Information (http://www.ncbi.nlm.nih.gov/). This algorithm involves first identifying high scoring sequence pairs (HSPs) by identifying short words of length W in the query sequence, which either match or satisfy some positive-valued threshold score T when aligned with a word of the same length in a database sequence. T is referred to as the neighborhood word score threshold (Altschul et al, supra). These initial neighborhood word hits act as seeds for initiating searches to find longer HSPs containing them. The word hits are then extended in both directions along each sequence for as far as the cumulative alignment score can be increased. Cumulative scores are calculated using, for nucleotide sequences, the parameters M (reward score for a pair of matching residues; always >0) and N (penalty score for mismatching residues; always <0). For amino acid sequences, a scoring matrix is used to calculate the cumulative score. Extension of the word hits in each direction are halted when: the cumulative alignment score falls off by the quantity X from its maximum achieved value; the cumulative score goes to zero or below, due to the accumulation of one or more negative-scoring residue alignments; or the end of either sequence is reached. The BLAST algorithm parameters W, T, and X determine the sensitivity and speed of the alignment. The BLASTN program (for nucleotide sequences) uses as defaults a wordlength (W) of 11, an expectation (E) of 10, M=5, N=−4, and a comparison of both strands. For amino acid sequences, the BLASTP program uses as defaults a wordlength (W) of 3, an expectation (E) of 10, and the BLOSUM62 scoring matrix (see Henikoff & Henikoff (1989) Proc. Natl. Acad. Sci. USA 89:10915).
In addition to calculating percent sequence identity, the BLAST algorithm also performs a statistical analysis of the similarity between two sequences (see, e.g., Karlin & Altschul (1993) Proc. Natl. Acad. Sci. USA, 90: 5873-5787). One measure of similarity provided by the BLAST algorithm is the smallest sum probability (P(N)), which provides an indication of the probability by which a match between two nucleotide or amino acid sequences would occur by chance. For example, a nucleic acid is considered similar to a reference sequence if the smallest sum probability in a comparison of the test nucleic acid to the reference nucleic acid is less than about 0.1, more preferably less than about 0.01, and most preferably less than about 0.001.
The phrase “specifically target/deliver” when used, for example with reference to a chimeric moiety of this invention refers to specific binding of the moiety to a target (e.g., a cell overexpressing the target protein(s)) this results in an increase in local duration and/or concentration of the moiety at or within the cell as compared to that which would be obtained without “specific” targeting. The specificity need not be absolute, but simply detectably greater/measurably avidity/affinity than that observed for a cell expressing the target protein(s) at normal (e.g., wildtype) or than that observed for a cell that does not express the target protein(s).
Amino acid residues are identified in the present application according to standard 3-letter or 1-letter abbreviations (e.g., as set forth in WIPO standard ST 25) and/or as set forth in Table 1.
TABLE 1
Amino acid abbreviations.
3 Letter
1 Letter
Amino Acid
Abbreviation
Abbreviation
L-Alanine
Ala
A
L-Arginine
Arg
R
L-Asparagine
Asn
N
L-AsparticAcid
Asp
D
L-Cysteine
Cys
C
L-Glutamine
Gln
Q
L-GlutamicAcid
Glu
E
Glycine
Gly
G
L-Histidine
His
H
L-Isoleucine
Ile
I
L-Leucine
Leu
L
L-Methionine
Met
M
L-Phenylalanine
Phe
F
L-Proline
Pro
P
L-Serine
Ser
S
L-Threonine
Thr
T
L-Tryptophan
Trp
W
L-Tyrosine
Tyr
Y
L-Valine
Val
V
L-Lysine
Lys
K
Enantiomeric amino acids described herein are preferred to be in the “L” isomeric form. However, residues in the “D” isomeric form can be substituted for any L-amino acid residue, provided the desired properties of the polypeptide are retained. All amino-acid residue sequences represented herein conform to the conventional left-to-right amino-terminus to carboxy-terminus orientation.
An “isolated antibody” refers to an antibody that at some time has existed outside an animal typically a mammal. Thus “isolated” excludes naturally occurring antibodies that have existed only in vivo. Alternatively, this term may refer to an antibody that has been sufficiently separated from other proteins or other biomolecules with which it would naturally be associated, so as to exist in “substantially pure” form. “Isolated” is not meant to exclude artificial or synthetic mixtures with other compounds or materials, or the presence of impurities that do not interfere with the fundamental activity, and that may be present, for example, due to incomplete purification, addition of stabilizers, or compounding into, for example pharmaceutically acceptable preparations.
The term “substantially pure” refers to a preparation comprising at least 50-60% by weight of a given material (e.g., nucleic acid, oligonucleotide, protein, etc.). More preferably, the preparation comprises at least 75% by weight, and most preferably 90-95% by weight of the given compound. Purity is measured by methods appropriate for the given compound (e.g., chromatographic methods, agarose or polyacrylamide gel electrophoresis, HPLC analysis, and the like).
The term “functional” as used herein implies that the nucleic or amino acid sequence is functional for the recited assay or purpose.
The phrase “consisting essentially of” when referring to a particular nucleotide or amino acid means a sequence having the properties of a given SEQ ID NO. For example, when used in reference to an amino acid sequence, the phrase includes the sequence per se and molecular modifications that would not affect the basic and novel characteristics of the sequence.
The term “tag”, “tag sequence”, or “protein tag” refers to a chemical moiety, either a nucleotide, oligonucleotide, polynucleotide or an amino acid, peptide or protein or other chemical, that when added to another sequence, provides additional utility or confers useful properties, particularly in the detection or isolation, of that sequence. Thus, for example, a homopolymer nucleic acid sequence or a nucleic acid sequence complementary to a capture oligonucleotide may be added to a primer or probe sequence to facilitate the subsequent isolation of an extension product or hybridized product. In the case of protein tags, histidine residues (e.g., 4 to 8 consecutive histidine residues) may be added to either the amino- or carboxy-terminus of a protein to facilitate protein isolation by chelating metal chromatography. Alternatively, amino acid sequences, peptides, proteins or fusion partners representing epitopes or binding determinants reactive with specific antibody molecules or other molecules (e.g., flag epitope, c-myc epitope, transmembrane epitope of the influenza A virus hemaglutinin protein, protein A, cellulose binding domain, calmodulin binding protein, maltose binding protein, chitin binding domain, glutathione S-transferase, and the like) may be added to proteins to facilitate protein isolation by procedures such as affinity or immunoaffinity chromatography. Chemical tag moieties include such molecules as biotin, which may be added to either nucleic acids or proteins and facilitates isolation or detection by interaction with avidin reagents, and the like. Numerous other tag moieties are known to, and can be envisioned by the trained artisan, and are contemplated to be within the scope of this definition.
A “clone” or “clonal cell population” is a population of cells derived from a single cell or common ancestor, e.g., by mitosis.
A “cell line” is a clone of a primary cell or cell population that is capable of stable growth in vitro for many generations.
The following antibody designations are used interchangeably: A5 is interchangeable with HER3.A5, B1D2 is interchangeable with C6-B1D2, ML3.9 is interchangeable with C6ML3-9, B12 is interchangeable with HER3.B12, F4 is interchangeable with HER3.F4, H3 is interchangeable with HER3.H3.
Where an antibody amino acid sequence is shown with a terminal (His)6 (SEQ ID NO:1) sequence, it will be recognized that the (His)6 sequence is a tag and not a component of the antibody CDR or framework. Where an antibody amino acid sequence is shown with the amino acids MA at the leader, it will be recognized that the MA is part of the bacterial leader sequence, not part of the antibody. It is not required for binding (for example we can make IgG without this MA and they bind with wildtype affinity.
Tumors often overexpress growth factor receptors that bind various ligands ligand and facilitate unrestricted tumor growth. One example of such growth factor receptors are the receptors of the Epidermal Growth Factor Receptor (EGFR) protein family.
Signal transduction through members of the Epidermal Growth Factor Receptor (EGFR) protein family is dependent upon the formation of homodimers or heterodimers triggered by the binding of ligand. This receptor family is comprised of four membrane-bound proteins: EGFR, HER2/neu, HER3 and HER4. Overexpression of these proteins has been correlated with a poor prognosis in a number of types of cancer, including, but not limited to, breast, colon, ovarian, endometrial, gastric, pancreatic, prostate and salivary gland cancers. While a number of groups have developed strategies to target individual members of the EGFR protein family (e.g., HER2/neu or EGFR) to inhibit tumor growth, none of the treatments has been proven to ultimately cure these forms of cancer.
In accordance with this invention, in certain embodiments, novel antibodies are provided that specifically or preferentially bind to members of the Epidermal Growth Factor Receptor (EGFR) family of proteins and that can be used to advantage in the detection and/or treatment of various cancers that overexpress the Epidermal Growth Factor Receptor (EGFR) family of proteins. In various embodiments the antibodies themselves can be contacted to such neoplastic cells whereby they inhibit growth and/or proliferation of such cells. Alternatively, the antibodies can be attached to an effector (e.g., detectable label, a cytotoxin, an epitope tag, a second antibody, etc.) whereby the effector can act to inhibit growth and/or proliferation of the target cells or can be used to detect and/or visualize the cells. In certain embodiments the effector is a second antibody thereby forming a bispecific antibody.
In various embodiments the bispecific antibody constructs are capable of simultaneously targeting multiple members (or multiple sites on a given member) of the EGFR protein family. The antibody constructs typically comprise a first antibody and a second antibody joined to each other where the first antibody and the second antibody bind specifically to different epitopes on the same or different members of the EGFR protein family. In certain embodiments, the bispecific antibody constructs are bispecific single chain molecules (e.g., bispecific single chain Fv (bs-scFv)), but the constructs need not be so limited. Thus, for example, chemically conjugated whole antibodies, or antibody fragments are also contemplated within the scope of this invention. In general, where bispecific antibodies are described herein, it will be appreciated that trispecfic, or more generally polyspecific antibodies are also contemplated.
In certain embodiments the bispecific antibodies of this invention bind to selected members of the EGFR protein family (e.g., EGFR, HER2/neu, HER3, HER4) to prevent ligand induced signaling and/or to trigger cytostatic and/or cytotoxic effects. The bispecific antibodies can also be used to specifically label cancer cells, solid tumors, and the like, and, more generally, to specifically target/deliver any conjugated or otherwise coupled effector (e.g., radioisotope, label, cytotoxin, drug, liposome, antibody, nucleic acid, dendrimer, etc.) to cancer cells including but not limited to isolated cancer cells, metastatic cells, solid tumor cells, and the like.
In certain preferred embodiments, the bispecific antibodies of this invention are bispecific single chain Fv antibodies (bs-scFv). Single chain Fv antibody fragments are engineered antibody derivatives that include both a heavy and a light chain variable region joined by a peptide linker molecule and are potentially more effective than unmodified IgG antibodies because their reduced size permits them to penetrate tissues and solid tumors more readily than IgG antibodies.
In one embodiment the bispecific antibodies of this invention (e.g., the bs-scFv antibody molecules) comprise two domains that provide two distinct binding specificities. A first domain can be selected for binding specificity to an epitope on one member of the EGFR protein family and the second domain can be selected for binding specificity for an epitope on a second member of the EGFR protein family. An illustrative bs-scFv molecule of the invention is “ALM”; a bispecific antibody that was created with one arm (domain) that exhibits binding specificity to an epitope on HER2/neu and a second arm (domain) that exhibits binding specificity to an epitope on HER3.
Alternatively, in certain embodiments, the bispecific antibodies of the invention can be generated such that one domain has binding specificity for one epitope on a member of the EGFR protein family and a second domain has binding specificity for a second distinct epitope on the same member of the EGFR protein family. An exemplary bs-scFv of this type is “ALF” which is composed of two distinct scFV molecules, both with a specificity for HER3.
I. Antibodies Forming the Monospecific, Bispecific or Polyspecific Antibodies of this Invention.
As indicated above, in certain embodiments, this invention provides novel isolated antibodies that specifically bind to a member of the EGFR protein family (e.g., EGFR/ErbB1, HER2/neu (ErbB2), HER3 (ErbB3), HER4 (ErbB4). Also, in certain embodiments, this invention a composition comprising these anti-EGFR member antibodies attached to an effector. Where the effector comprise a second (or more) antibodies, a bispecific (or polyspecific) antibody is provided.
In certain embodiments the bispecific or polyspecific antibodies of this invention comprise two or more binding domains (antibodies) at least two of which are specific to different epitopes of the EGFR protein family (e.g., two or more monospecific antibodies). Preferred antibodies of this invention comprise domains specific to epitopes of EGFR, HER2/neu, HER3 and HER4.
Using phage display approaches, a number of single chain antibodies have been raised that are specific to various epitopes on members of the EGFR protein family. These single chain Fv antibodies can be used as domains/arms to construct a bispecific or polyspecific antibody. A number of these antibodies are provided, below, in Table 2 and in the Figures (e.g.,
TABLE 2
Single-chain Fv antibodies directed against
epitopes of the EGFR protein family.
Anti-HER2/neu*:
Anti-HER3**:
C6.5***
HER3.A5
C6ML3-9 (ML3.9 or C6ML3.9)
HER3.F4
C6MH3-B1 (B1 or C6MH3.B1)
HER3.H1
C6-B1D2 (B1D2 or C6MH3-B1D2)
HER.H3
F5**
HER.E12
F5B6H2
HER3.B12
Anti-EGFR**:
Anti-HER4:
EGFR.E12
HER4.B4
EGFR.C10
HER4.G4
EGFR.B11
HER4.F4
EGFR.E8
HER4.A8
EGFR.1C10
HER4.B6
HER4.D4
HER4.D7
HER4.D11
HER4.D12
HER4.E3
HER4.E7
HER4.F8
HER4.C7
*Sequences are disclosed in Schier et al. (1996). J. Mol. Biol., 255(1): 28-43. See also Schier et al. (1995) Immunotechnology, 1: 73-81.
**Sequences are provided in Appendix A hereinbelow;
***Sequences are also shown in FIGS. 13-19.
In addition amino acid sequences for the VH and VL domains are listed in Tables 3 and 4, respectively. (SEQ ID NO:62)
TABLE 3
Illustrative VH domains of anti-EGFR family member antibodies.
Ab
Fr1
CDR1
Fr2
CDR2
Fr3
CDR3
Fr4
A5
QVQLVQSGGGLVKPGG
TYDMN
WVRQAPGKGLEWVS
SISSSSSYIYYADSVKG
RFTISRDNAKNSLY6LQMNSLRAEDT
DGVATTPFDY
WGQGTLVTVSS
SLRLSCAASGFSFN
(SEQ ID NO: 63)
(SEQ ID NO: 64)
(SEQ ID NO: 65)
AVYYCAR
(SEQ ID NO: 67)
(SEQ ID NO: 68)
(SEQ ID NO: 62)
(SEQ ID NO: 66)
F5B6H2
QVQLVESGGGLVQPGG
SYAMS
WVRQAPGKGLEWVS
AISGRGDNTYYADSVKG
RFTISRDNSKNTLYLQMNSLRAEDTA
MTSNAVGFDY
WGQGTLVTVSS
SLRLSCAASGFTFR
(SEQ ID NO: 70)
(SEQ ID NO: 71)
(SEQ ID NO: 72)
VYYCAK
(SEQ ID NO: 74)
(SEQ ID NO: 75)
(SEQ ID NO: 69)
(SEQ ID NO: 73)
B1D2
QVQLVQSGAEVKKPGE
SYWIA
WVRQMPGKGLEYMG
LIYPGDSDTKYSPSFQG
QVTISVDKSVSTAYLQWSSLKPSDSA
HDVGYCTDRTCAKWPEWL
WGQGTLVTVSS
SLKISCKGSGYSFT
(SEQ ID NO: 77)
(SEQ ID NO: 78)
(SEQ ID NO: 79)
VYFCAR
GV
(SEQ ID NO: 82)
(SEQ ID NO: 76)
(SEQ ID NO: 80)
(SEQ ID NO: 81)
ML3.9
QVQLVQSGAEVKKPGE
SYWIA
WVRQMPGKGLEYMG
LIYPGDSDTKYSPSFQG
QVTISVDKSVSTAYLQWSSLKPSDSA
HDVGYCSSSNCAKWPEYF
WGQGTLVTVSS
SLKISCKGSGYSFT
(SEQ ID NO: 84)
(SEQ ID NO: 85)
(SEQ ID NO: 86)
VYFCAR
QH
(SEQ ID NO: 89)
(SEQ ID NO: 83)
(SEQ ID NO: 87)
(SEQ ID NO: 88)
B12
QVQLVQSGGGLVQPGR
DYAMH
WVRQAPGKGLEWVS
GISWNSGSIGYADSVKG
RFTISRDNAKNSLYLQMNSLRPEDTA
DLGAKQWLEGFDY
WGQGTLVTVSS
(HER3.B12)
SLRLSCAASGFTFD
(SEQ ID NO: 91)
(SEQ ID NO: 92)
(SEQ ID NO: 93)
VYYCAR
(SEQ ID NO: 95)
(SEQ ID NO: 96)
(SEQ ID NO: 90)
(SEQ ID NO: 94)
F4
QVQLQESGGGLVKPGG
SYAMS
WVRQAPGKGLEWVS
TISGSGGSTYYADSVKG
RFTISRDNSKNTLYLQMNSLRAEDTA
GYSSSESEVASGY
WGQGTLVTVSS
SLRLSCAASGFTFS
(SEQ ID NO: 98)
(SEQ ID NO: 99)
(SEQ ID NO: 100)
VYYCAK
(SEQ ID NO: 102)
(SEQ ID NO: 103)
(SEQ ID NO: 97)
(SEQ ID NO: 101)
H3
QVQLQESGGGLVKPGG
SYWMS
WVRQAPGKGLEWVA
NINRDGSASYYVDSVKG
RFTISRDDAKNSLYLQMNSLRAEDTA
DRGVGYFDL
WGRGTLVTVSS
(HER3.H3)
SLRLSCAASGFTFS
(SEQ ID NO: 105)
(SEQ ID NO: 106)
(SEQ ID NO: 107)
VYYCAR
(SEQ ID NO: 109)
(SEQ ID NO: 110)
(SEQ ID NO: 104)
(SEQ ID NO: 108)
C6.5
QVQLVQSGAEVKKPGE
SYWIA
WVRQMPGKGLEWMG
LIYPGDSDTKYSPSFQG
QVTISVDKSVSTAYLQWSSLKPSDSA
HDVGYCSSSNCSKWPEY
WGQGTLVTVSS
SLKISCKGSGYSFT
(SEQ ID NO: 112)
(SEQ ID NO: 113)
(SEQ ID NO: 114)
VYFCAR
FQH
(SEQ ID NO: 117)
(SEQ ID NO: 111)
(SEQ ID NO: 115)
(SEQ ID NO: 116)
C6MH3-B1
QVQLVQSGAEVKKPGE
SYWIA
WVRQMPGKGLEYMG
LIYPGDSDTKYSPSFQG
QVTISVDKSVSTAYLQWSSLKPSDSA
HDVGYCTDRTCAKWPEY
WGQGTLVTVSS
(HER3.B1)
SLKISCKGSGYSFT
(SEQ ID NO: 119)
(SEQ ID NO: 120)
(SEQ ID NO: 121)
VYFCAR
FQH
(SEQ ID NO: 124)
(SEQ ID NO: 118)
(SEQ ID NO: 122)
(SEQ ID NO: 123)
EGFR.C10
EVQLVQSGAEVKKPGS
SYAIS
WVRQAPGQGLEWMG
GIIPIFGTANYAQKFQG
RVTITADESTSTAYMELSSLRSEDTA
EEGPYCSSTSCYGAFDI
WGQGTLVTVSS
SVKVSCKASGGTFS
(SEQ ID NO: 126)
(SEQ ID NO: 127)
(SEQ ID NO: 128)
VYYCAR
(SEQ ID NO: 130)
(SEQ ID NO: 131)
(SEQ ID NO: 125)
(SEQ ID NO: 129)
EGFR.E12
EVQLVQSGAEVKKPGS
SYAIS
WVRQAPGQGLEWMG
GIIPIFGTANYAQKFQG
RVTITADESTSTAYMELSSLRSEDTA
EEGPYCSSTSCYGAFDI
WGQGTLVTVSS
SVKVSCKASGGTFS
(SEQ ID NO: 133)
(SEQ ID NO: 134)
(SEQ ID NO: 135)
VYYCAR
(SEQ ID NO: 137)
(SEQ ID NO: 138)
(SEQ ID NO: 132)
(SEQ ID NO: 136)
F5
QVQLVESGGGLVQPGG
SYAMDS
WVRQAPGKGLEWVS
AISGRGDNTYYADSVKG
RFTISRDNSKNTLYLQMNSLRAEDTA
MTSNAFAFDY
WGQGTLVTVSS
SLRLSCAASGFTFR
(SEQ ID NO: 140)
(SEQ ID NO: 141)
(SEQ ID NO: 142)
VYYCAK
(SEQ ID NO: 144)
(SEQ ID NO: 145)
(SEQ ID NO: 139)
(SEQ ID NO: 143)
HER3.E12
QVQLVESGGGVVQPGR
DYYIH
WVRQAPGKGLEWMA
VISYDGNNKYYAASVKD
RFTISRDNSKNTVSLQMNSLRAEDTA
DLYGDYALDY
WGQGTLVTVSS
SLRLSCAASGFTFS
(SEQ ID NO: 147)
(SEQ ID NO: 148)
(SEQ ID NO: 149)
VYYCAR
(SEQ ID NO: 151)
(SEQ ID NO: 152)
(SEQ ID NO: 146)
(SEQ ID NO: 150)
HER4.B6
QVQLVESGGGVVQPGR
SYGMH
WVRQAPGKGLEWVA
VISYDGSNKYYADSVKG
RFTISRDNSKNTVSLQMNSLRAEDTA
YPLN
WGQGTLVTVSS
SLRLSCAASGFTFS
(SEQ ID NO: 154)
(SEQ ID NO: 155)
(SEQ ID NO: 156)
VYYCAK
(SEQ ID NO: 158)
(SEQ ID NO: 159)
(SEQ ID NO: 153)
(SEQ ID NO: 157)
G98A.
QVQLVQSGAEVKKPGE
SYWIA
WVRQMPGKGLEYMG
LIYPGDSDTKYSPSFQ
QVTISVDKSVSTAYLQWSSLKPSDSA
HDVAYCSSSNCAKWPEYF
WGQGTLVTVSS
SLKISCKGSGYSFT
(SEQ ID NO: 161)
(SEQ ID NO: 162)
G
VYFCAR
QH
(SEQ ID NO: 166)
(SEQ ID NO: 160)
(SEQ ID NO: 163)
(SEQ ID NO: 164)
(SEQ ID NO: 165)
TABLE 4
Illustrative VL domains of anti-EGFR family member antibodies.
Ab
Fr1
CDR1
Fr2
CDR2
FR3
CDR3
Fr4
A5
QSVLTQPPSVSGAPGQTVTISC
TGSSSNIGAGYDVH
WYQQLPGTAPKLLIY
GNSNRPS
GVPDRFSGSKSGTSASLAITGL
QSYDSSLSAL
FGGGTKLTVLG
(SEQ ID NO: 167)
(SEQ ID NO: 168)
(SEQ ID NO: 169)
(SEQ ID NO: 170)
QAEDEADYYC
(SEQ ID NO: 172)
(SEQ ID NO: 173)
(SEQ ID NO: 171)
F5B6H2
QSVLTQPPSVSGAPGQRVTISC
TGRHSNIGLGYGVH
WYQQLPGTAPKLLIY
GNTNRPS
GVPDRFSGFKGFTSASLAITGL
QSYDRRTPGWV
FGGGTKLTVLG
(SEQ ID NO: 174)
(SEQ ID NO: 175)
(SEQ ID NO: 176)
(SEQ ID NO: 177)
QAEDEADYYC
(SEQ ID NO: 179)
(SEQ ID NO: 180)
(SEQ ID NO: 178)
B1D2
QSVLTQPPSVSQQPGQKVTISC
SGSSSNIGNNYVS
WYQQLPGTAPKLLIY
DHTNRPA
GVPDRFSGSKSGTSASLAISGF
ASWDYTLSGWV
FGGGTKLTVL
(SEQ ID NO: 181)
(SEQ ID NO: 182)
(SEQ ID NO: 183)
(SEQ ID NO: 184)
RSEDEADYYC
(SEQ ID NO: 186)
(SEQ ID NO: 187)
(SEQ ID NO: 185)
ML3.9
QSVLTQPPSVSAAPGQKVTISC
SGSSSNIGNNYVS
WYQQLPGTAPKLLIY
DHTNRPA
GVPDRFSGSKSGTSASLAISGF
ASWDYTLSGWV
FGGGTKLTVL
(SEQ ID NO: 188)
(SEQ ID NO: 189)
(SEQ ID NO: 190)
(SEQ ID NO: 191)
RSEDEADYYC
(SEQ ID NO: 193)
(SEQ ID NO: 194)
(SEQ ID NO: 192)
B12
NFMLTQDPAVSVALGQTVRITC
QGDSLRSYYAS
WYQQKPGQAPVLVIY
GKNNRPS
GIPDRFSGSTSGNSASLTITGA
NSRDSSGNHWV
FGGGTKVTVL
(SEQ ID NO: 195)
(SEQ ID NO: 196)
(SEQ ID NO: 197)
(SEQ ID NO: 198)
QAEDEADYYC
(SEQ ID NO: 200)
(SEQ ID NO: 201)
(SEQ ID NO: 199)
F4
DIVMTQSPSSLSASVGDRVTITC
RASQGIRNDLG
WYQQKAGKAPKLLIY
AASSLQS
GVPSRFSGSGSGTDFTLTISSL
QQAHSFPPT
FGGGTKVEIKR
(SEQ ID NO: 202)
(SEQ ID NO: 203)
(SEQ ID NO: 204)
(SEQ ID NO: 205)
QPDDFATYFC
(SEQ ID NO: 207)
(SEQ ID NO: 208)
(SEQ ID NO: 206)
H3
QSALTQPASVSGSPGQSITISC
TGTSSDVGGYNFVS
WYQQHPGKAPKLMIY
DVSDRPS
GVSDRFSGSKSGNTASLIISGL
SSYGSSSTHVI
FGGGTKVTVL
(HER3.H3)
(SEQ ID NO: 209)
(SEQ ID NO: 210)
(SEQ ID NO: 211)
(SEQ ID NO: 212)
QADDEADYYC
(SEQ ID NO: 214)
(SEQ ID NO: 215)
(SEQ ID NO: 213)
C6.5
QSVLTQPPSVSQQPGQKVTISC
SGSSSNIGNNYVS
WYQQLPGTAPKLLIY
GHTNRPA
GVPDRFSGSKSGTSASLAISGF
AAWDDSLSGWV
FGGGTKLTVL
(SEQ ID NO: 216)
(SEQ ID NO: 217)
(SEQ ID NO: 218)
(SEQ ID NO: 219)
RSEDEADYYC
(SEQ ID NO: 221)
(SEQ ID NO: 222)
(SEQ ID NO: 220)
C6MH3-B1
QSVLTQPPSVSQQPGQKVTISC
SGSSSNIGNNYVS
WYQQLPGTAPKLLIY
DHTNRPA
GVPDRFSGSKSGTSASLAISGF
ASWDYTLSGWV
FGGGTKLTVL
(HEB1)
(SEQ ID NO: 223)
(SEQ ID NO: 224)
(SEQ ID NO: 225)
(SEQ ID NO: 226)
RSEDEADYYV
(SEQ ID NO: 228)
(SEQ ID NO: 229)
(SEQ ID NO: 227)
EGFR.C10
QSVLTQDPAVSVALGQTVKITC
QGDSLRSYFAS
WYQQKPGQAPTLVMY
ARNDRPA
GVPDRFSGSKSGTSASLAISGL
AAWDDSLNGYL
FGAGTKLTVL
(SEQ ID NO: 230)
(SEQ ID NO: 231)
(SEQ ID NO: 232)
(SEQ ID NO: 233)
QSEDEADYYC
(SEQ ID NO: 235)
(SEQ ID NO: 236)
(SEQ ID NO: 234)
EGFR.E12
QSVLTQDPAVSVALGQTVKITC
QGDSLRSYFAS
WYQQKPGQAPTLVMY
ARNDRPA
GVPDRFSGSKSGTSASLAISGL
AAWDDSLNGYL
FGAGTKLTVL
(SEQ ID NO: 237)
(SEQ ID NO: 238)
(SEQ ID NO: 239)
(SEQ ID NO: 240)
QSEDEADYYC
(SEQ ID NO: 242)
(SEQ ID NO: 243)
(SEQ ID NO: 241)
F5
QSVLTQPPSVSGAPGQTVTISC
TGSSSNIGAGYGVH
WYQQLPGTAPKLLIY
GNTNRPS
GVPDRFSGFKSGTSASLAITGL
QSYDSSLSGWV
FGGGTKLTVL
(SEQ ID NO: 244)
(SEQ ID NO: 245)
(SEQ ID NO: 246)
(SEQ ID NO: 247)
QAEDEADYYC
(SEQ ID NO: 249)
(SEQ ID NO: 250)
(SEQ ID NO: 248)
HER3.E12
DIQMTQSPSTLSASLGDRVTITC
RASQSIGSWLA
WYQQKPGKAPKLLIY
KASTLES
GCPSRFTGSGSGTEFTLTISGL
QKLSSYPLT
FGGGTKVEIKR
(SEQ ID NO: 251)
(SEQ ID NO: 252)
(SEQ ID NO: 253)
(SEQ ID NO: 254)
QPEDFATYYC
(SEQ ID NO: 256)
(SEQ ID NO: 257)
(SEQ ID NO: 255)
HER4.B6
QSALTQPASVSGSPGQSITISC
TGTSSDVGGYNYVS
WYQQHPGKAPKLMIY
EVSNRPS
GVSNRFSGSKSGNTASLTISGL
NSYTSSSTWV
FGGGTKLTVL
(SEQ ID NO: 258)
(SEQ ID NO: 259)
(SEQ ID NO: 260)
(SEQ ID NO: 261)
QAEDEADYYC
(SEQ ID NO: 263)
(SEQ ID NO: 264)
(SEQ ID NO: 262)
G98A
QSVLTQPPSVSQQPGQKVTISC
SGSSSNIGNNYVS
WYQQLPGTAPKLLIY
GHTNRPA
GVPDRFSGSKSGTSASLAISGF
AAWDDSLSGWV
FGGGTKLTVL
(SEQ ID NO: 265)
(SEQ ID NO: 266)
(SEQ ID NO: 267)
(SEQ ID NO: 268)
RSEDEADYYC
(SEQ ID NO: 270)
(SEQ ID NO: 271)
(SEQ ID NO: 269)
In various embodiments, two or more of these antibodies can be paired to form either a bs-scFv antibody with binding specificity for two distinct epitopes on different members of the EGFR protein family or a bs-scFv antibody with binding specificity for two distinct epitopes on the same member of the EGFR protein family.
A) Identification of Other Antibodies Binding the Same Epitope(s) as Antibodies the Illustrated Anti-EGFR Family Member Antibodies.
The antibodies of this invention need not be limited to the use of the particular antibodies enumerated in Tables 2-4 and/or shown in the Figures herewith. In effect, each of these identifies an epitope of a member of the EGFR protein family and these antibodies can readily be used to identify other antibodies that bind to the same epitopes. Thus, in certain embodiments, the antibodies of this invention comprise one or more antibodies that specifically bind an epitope specifically bound by an antibody of Tables 2-4 and/or shown in the Figures herewith (e.g., an antibody selected from the group consisting of C6.5, C6ML3-9, C6 MH3-B1, C6-B1D2, F5, HER3.A5, HER3.F4, HER3.H1, HER3.H3, HER3.E12, HER3.B12, EGFR.E12, EGFR.C10, EGFR.B11, EGFR.E8, HER4.B4, HER4.G4, HER4.F4, HER4.A8, HER4.B6, HER4.D4, HER4.D7, HER4.D11, HER4.D12, HER4.E3, HER4.E7, HER4.F8, F5B6H2, and HER4.C7).
Such antibodies are readily identified by screening whole antibodies, antibody fragments, or single chain antibodies for their ability to compete with the antibodies listed in Table 2 for their ability to bind to a protein comprising the target epitope. In other words, candidate antibodies can be screened for cross-reactivity with the antibodies listed in Tables 2-4 and/or shown in the Figures herewith against the target protein in the EGFR protein family.
In one illustrative embodiment, the antibodies of this invention specifically bind to one or more epitopes recognized by antibodies listed in Tables 2-4 and/or shown in the Figures herewith. In other words, such antibodies are cross-reactive with one of more of these antibodies. Means of assaying for cross-reactivity are well known to those of skill in the art (see, e.g., Dowbenko et al. (1988) J. Virol. 62: 4703-4711).
For example, in certain embodiments, cross-reactivity can be ascertained by providing an isolated EGFR family member (e.g., EGFR, HER2/neu, HER3 and HER4 or a fragment thereof) attached to a solid support and assaying the ability of a test antibody to compete with one or more of the antibodies listed in Tables 2-4 and/or shown in the Figures herewith for binding to the target protein. Thus, immunoassays in a competitive binding format are can be used for crossreactivity determinations. For example, in one embodiment, the EGFR family member polypeptide is immobilized to a solid support. Antibodies to be tested (e.g., generated by selection from a phage-display library, or generated in a whole antibody library) are added to the assay compete with one or more of the antibodies listed in Tables 2-4 and/or shown in the Figures herewith for binding to the immobilized polypeptide. The ability of test antibodies to compete with the binding of the antibodies of Tables 2-4 and/or shown in the Figures herewith to the immobilized protein are compared. The percent crossreactivity above proteins can then calculated, using standard calculations. If the test antibody competes with one or more of the antibodies of Tables 2-4 and/or shown in the Figures herewith and has a binding affinity comparable to or greater than about 1×10−8 M, more preferably greater than 1×10−9, or 1×10−10, or more generally with an affinity equal to or greater than the corresponding (competing) antibody, e.g., of Tables 2-4 and/or shown in the Figures herewith then the antibody is well suited for use in the present invention.
In one illustrative embodiment, cross-reactivity is performed by using surface plasmon resonance in a BIAcore. In a BIAcore flow cell, the EGFR protein is coupled to a sensor chip. With a typical flow rate of 5 ml/min, a titration of 100 nM to 1 μM antibody is injected over the flow cell surface for about 5 minutes to determine an antibody concentration that results in near saturation of the surface. Epitope mapping or cross-reactivity is then evaluated using pairs of antibodies at concentrations resulting in near saturation and at least 100 RU of antibody bound. The amount of antibody bound is determined for each member of a pair, and then the two antibodies are mixed together to give a final concentration equal to the concentration used for measurements of the individual antibodies. Antibodies recognizing different epitopes show an essentially additive increase in the RU bound when injected together, while antibodies recognizing identical epitopes show only a minimal increase in RU. In a particularly preferred embodiment, antibodies are said to be cross-reactive if, when “injected” together they show an essentially additive increase (preferably an increase by at least a factor of about 1.4, more preferably an increase by at least a factor of about 1.6, and most preferably an increase by at least a factor of about 1.8 or 2.
Cross-reactivity at the epitopes recognized by the antibodies listed in Tables 2-4 and/or shown in the Figures herewith can ascertained by a number of other standard techniques (see, e.g., Geysen et al (1987) J. Immunol. Meth. 102: 259-274).
In addition, number of the antibodies identified in Table 2 have been sequenced (see, e.g., Tables 3-4 and/or the Figures herewith). The amino acid sequences comprising the complementarity determining regions (CDRs) are therefore known. Using this sequence information, the same or similar complementarity determining regions can be engineered into other antibodies to produce chimeric full size antibodies and/or antibody fragments, e.g., to ensure species compatibility, to increase serum half-life, and the like. A large number of methods of generating chimeric antibodies are well known to those of skill in the art (see, e.g., U.S. Pat. Nos. 5,502,167, 5,500,362, 5,491,088, 5,482,856, 5,472,693, 5,354,847, 5,292,867, 5,231,026, 5,204,244, 5,202,238, 5,169,939, 5,081,235, 5,075,431, and 4,975,369).
B) Phage Display Methods to Select Other “Related” Anti-EGFR Family Member Antibodies.
1) Chain Shuffling Methods.
One approach to creating modified single-chain antibody (scFv) gene repertoires has been to replace the original VH or VL gene with a repertoire of V-genes to create new partners (chain shuffling) (Clackson et al. (1991) Nature. 352: 624-628). Using chain shuffling and phage display, the affinity of a human scFv antibody fragment that bound the hapten phenyloxazoline (phOx) was increased from 300 nM to 1 nM (300 fold) (Marks et al. (1992) Bio/Technology 10: 779-783).
Thus, for example, to alter the affinity of an anti-EGFR family member antibody (e.g., A5, F5B6H2, etc.), a mutant scFv gene repertoire can be created containing a VH gene of the prototypic antibodies (e.g. as shown in Table 3 and/or the figures herewith) and a human VL gene repertoire (light chain shuffling). The scFv gene repertoire can be cloned into a phage display vector, e.g., pHEN-1 (Hoogenboom et al. (1991) Nucleic Acids Res., 19: 4133-4137) or other vectors and, after transformation, a library of transformants is obtained.
Similarly, for heavy chain shuffling, the anti-EGFR family member antibody (e.g., A5, F5B6H2, etc.) VL CDR1 and/or CDR2, and/or CDR3 and light chain e.g. as shown in Table 4 and/or the figures herewith) are cloned into a vector containing a human VH gene repertoire to create a phage antibody library transformants. For detailed descriptions of chain shuffling to increase antibody affinity see Schier et al. (1996) J. Mol. Biol., 255: 28-43, and the like.
2) Site-Directed Mutagenesis to Improve Binding Affinity.
The majority of antigen contacting amino acid side chains are typically located in the complementarity determining regions (CDRs), three in the VH (CDR1, CDR2, and CDR3) and three in the VL (CDR1, CDR2, and CDR3) (Chothia et al. (1987) J. Mol. Biol., 196: 901-917; Chothia et al. (1986) Science, 233: 755-758; Nhan et al. (1991) J. Mol. Biol., 217: 133-151). These residues contribute the majority of binding energetics responsible for antibody affinity for antigen. In other molecules, mutating amino acids which contact ligand has been shown to be an effective means of increasing the affinity of one protein molecule for its binding partner (Lowman et al. (1993) J. Mol. Biol., 234: 564-578; Wells (1990) Biochemistry, 29: 8509-8516). Site-directed mutagenesis of CDRs and screening against the cells overexpressing one or more EGFR family members can produce antibodies having improved binding affinity.
3) CDR Randomization to Produce Higher Affinity Human scFv.
In an extension of simple site-directed mutagenesis, mutant antibody libraries can be created where partial or entire CDRs are randomized (VL CDR1 CDR2 and/or CDR3 and/or VH CDR1, CDR2 and/or CDR3). In one embodiment, each CDR is randomized in a separate library, using a known antibody (e.g., UA20, UA8, 585II41, 585II41.1, 585II56, 3076, 3051, M49R, RCI-14, II79—4, II79—3, T5II-4B.1, T5II-4B.2, RCI-11, RCI-20, CI-11A, CI-14A, and/or S95-2) as a template. The CDR sequences of the highest affinity mutants from each CDR library are combined to obtain an additive increase in affinity. A similar approach has been used to increase the affinity of human growth hormone (hGH) for the growth hormone receptor over 1500 fold from 3.4×10−10 to 9.0×10−13 M (Lowman et al. (1993) J. Mol. Biol., 234: 564-578).
VH CDR3 often occupies the center of the binding pocket, and thus mutations in this region are likely to result in an increase in affinity (Clackson et al. (1995) Science, 267: 383-386). In one embodiment, four VH CDR3 residues are randomized at a time using the nucleotides NNS (see, e.g., Schier et al. (1996) Gene, 169: 147-155; Schier and Marks (1996) Human Antibodies and Hybridomas. 7: 97-105, 1996; and Schier et al. (1996) J. Mol. Biol. 263: 551-567).
C) Creation of Other Antibody Forms.
Using the known and/or identified sequences (e.g. VH and/or VL sequences) of the single chain antibodies provided herein other antibody forms can readily be created. Such forms include, but are not limited to multivalent antibodies, full antibodies, scFv, (scFv′)2, Fab, (Fab′)2, chimeric antibodies, and the like.
1) Creation of Homodimers.
For example, to create (scFv′)2 antibodies, two scFvs are joined, either directly, or through a linker (e.g., a carbon linker, a peptide, etc.), or through a disulfide bond between, for example, two cysteins. Thus, for example, to create disulfide linked scFv, a cysteine residue can be introduced by site directed mutagenesis at the carboxy-terminus of the antibodies described herein.
An scFv can be expressed from this construct, purified by IMAC, and analyzed by gel filtration. To produce (scFv′)2 dimers, the cysteine is reduced by incubation with 1 mM 3-mercaptoethanol, and half of the scFv blocked by the addition of DTNB. Blocked and unblocked scFvs are incubated together to form (scFv′)2 and the resulting material can be analyzed by gel filtration. The affinity of the resulting dimer can be determined using standard methods, e.g. by BIAcore.
In one particularly preferred embodiment, the (scFv′)2 dimer is created by joining the scFvs fragments through a linker, more preferably through a peptide linker. This can be accomplished by a wide variety of means well known to those of skill in the art. For example, one preferred approach is described by Holliger et al. (1993) Proc. Natl. Acad. Sci. USA, 90: 6444-6448 (see also WO 94/13804).
It is noted that using the VH and/or VL sequences provided herein Fabs and (Fab′)2 dimers can also readily be prepared. Fab is a light chain joined to VH-CH1 by a disulfide bond and can readily be created using standard methods known to those of skill in the art. The F(ab)′2 can be produced by dimerizing the Fab, e.g. as described above for the (scFv′)2 dimer.
2) Chimeric Antibodies.
The antibodies of this invention also include “chimeric” antibodies in which a portion of the heavy and/or light chain is identical with or homologous to corresponding sequences in antibodies derived from a particular species or belonging to a particular antibody class or subclass, while the remainder of the chain(s) is identical with or homologous to corresponding sequences in antibodies derived from another species or belonging to another antibody class or subclass, as well as fragments of such antibodies, so long as they exhibit the desired biological activity (see, e.g., U.S. Pat. No. 4,816,567; Morrison et al. (1984) Proc. Natl. Acad. Sci. 81: 6851-6855, etc.).
While the prototypic antibodies provided herein are fully human antibodies, chimeric antibodies are contemplated, particularly when such antibodies are to be used in species other than humans (e.g., in veterinary applications). Chimeric antibodies are antibodies comprising a portions from two different species (e.g. a human and non-human portion). Typically, the antigen combining region (or variable region) of a chimeric antibody is derived from a one species source and the constant region of the chimeric antibody (which confers biological effector function to the immunoglobulin) is derived from another source. A large number of methods of generating chimeric antibodies are well known to those of skill in the art (see, e.g., U.S. Pat. Nos. 5,502,167, 5,500,362, 5,491,088, 5,482,856, 5,472,693, 5,354,847, 5,292,867, 5,231,026, 5,204,244, 5,202,238, 5,169,939, 5,081,235, 5,075,431, and 4,975,369, and PCT application WO 91/0996).
In general, the procedures used to produce chimeric antibodies consist of the following steps (the order of some steps may be interchanged): (a) identifying and cloning the correct gene segment encoding the antigen binding portion of the antibody molecule; this gene segment (known as the VDJ, variable, diversity and joining regions for heavy chains or VJ, variable, joining regions for light chains, or simply as the V or variable region or VH and VL regions) may be in either the cDNA or genomic form; (b) cloning the gene segments encoding the human constant region or desired part thereof; (c) ligating the variable region to the constant region so that the complete chimeric antibody is encoded in a transcribable and translatable form; (d) ligating this construct into a vector containing a selectable marker and gene control regions such as promoters, enhancers and poly(A) addition signals; (e) amplifying this construct in a host cell (e.g., bacteria); (f) introducing the DNA into eukaryotic cells (transfection) most often mammalian lymphocytes; and culturing the host cell under conditions suitable for expression of the chimeric antibody.
Antibodies of several distinct antigen binding specificities have been manipulated by these protocols to produce chimeric proteins (e.g., anti-TNP: Boulianne et al. (1984) Nature, 312: 643; and anti-tumor antigens: Sahagan et al. (1986) J. Immunol., 137: 1066). Likewise several different effector functions have been achieved by linking new sequences to those encoding the antigen binding region. Some of these include enzymes (Neuberger et al. (1984) Nature 312: 604), immunoglobulin constant regions from another species and constant regions of another immunoglobulin chain (Sharon et al. (1984) Nature 309: 364; Tan et al., (1985) J. Immunol. 135: 3565-3567).
In certain embodiments, a recombinant DNA vector is used to transfect a cell line that produces a cancer specific antibody of this invention. The novel recombinant DNA vector contains a “replacement gene” to replace all or a portion of the gene encoding the immunoglobulin constant region in the cell line (e.g., a replacement gene may encode all or a portion of a constant region of a human immunoglobulin, a specific immunoglobulin class, or an enzyme, a toxin, a biologically active peptide, a growth factor, inhibitor, or a linker peptide to facilitate conjugation to a drug, toxin, or other molecule, etc.), and a “target sequence” that allows for targeted homologous recombination with immunoglobulin sequences within the antibody producing cell.
In another embodiment, a recombinant DNA vector is used to transfect a cell line that produces an antibody having a desired effector function, (e.g., a constant region of a human immunoglobulin) in which case, the replacement gene contained in the recombinant vector may encode all or a portion of a region of an antibody of this invention and the target sequence contained in the recombinant vector allows for homologous recombination and targeted gene modification within the antibody producing cell. In either embodiment, when only a portion of the variable or constant region is replaced, the resulting chimeric antibody can define the same antigen and/or have the same effector function yet be altered or improved so that the chimeric antibody may demonstrate a greater antigen specificity, greater affinity binding constant, increased effector function, or increased secretion and production by the transfected antibody producing cell line, etc.
Regardless of the embodiment practiced, the processes of selection for integrated DNA (via a selectable marker), screening for chimeric antibody production, and cell cloning, can be used to obtain a clone of cells producing the chimeric antibody.
Thus, a piece of DNA that encodes a modification for a monoclonal antibody can be targeted directly to the site of the expressed immunoglobulin gene within a B-cell or hybridoma cell line. DNA constructs for any particular modification can be made to alter the protein product of any monoclonal cell line or hybridoma. The level of expression of chimeric antibody should be higher when the gene is at its natural chromosomal location rather than at a random position. Detailed methods for preparation of chimeric (humanized) antibodies can be found in U.S. Pat. No. 5,482,856.
3) Intact Human Antibodies.
In another embodiment, this invention provides for intact, fully human antibodies. Such antibodies can readily be produced in a manner analogous to making chimeric human antibodies. In this instance, instead of using a recognition function derived, e.g. from a murine, the fully human recognition function (e.g., VH and VL) of the antibodies described herein is utilized.
4) Diabodies.
In certain embodiments, this invention contemplates diabodies comprising one or more of the VH and VL domains described herein. The term “diabodies” refers to antibody fragments typically having two antigen-binding sites. The fragments typically comprise a heavy chain variable domain (VH) connected to a light chain variable domain (VL) in the same polypeptide chain (VH-VL). By using a linker that is too short to allow pairing between the two domains on the same chain, the domains are forced to pair with the complementary domains of another chain and create two antigen-binding sites. Diabodies are described more fully in, for example, EP 404,097; WO 93/11161, and Holliger et al. (1993) Proc. Natl. Acad. Sci. USA 90: 6444-6448.
In short, using routine methods, the antibodies listed in Tables 2-3 and/or shown in the Figures herewith can readily be used to generate or identify other antibodies (full length, antibody fragments, single-chain, and the like) that bind to the same epitope. Similarly, the antibodies listed in Tables 2-3 and/or shown in the Figures herewith can readily be utilized to generate other antibodies that have the same or similar complementarity determining regions (CDRs).
II. Preparation of Antibody Molecules.
The antibodies, bispecific antibodies, polyspecific antibodies, and chimeric moieties described herein can be made by methods well known to those of skill in the art.
A) Chemical Synthesis.
Using the sequence information provided herein, for example, the antibodies of this invention (e.g., A5, F5B6H2, etc.), or variants thereof, can be chemically synthesized using well known methods of peptide synthesis. Solid phase synthesis in which the C-terminal amino acid of the sequence is attached to an insoluble support followed by sequential addition of the remaining amino acids in the sequence is one preferred method for the chemical synthesis of single chain antibodies. Techniques for solid phase synthesis are described by Barany and Merrifield, Solid Phase Peptide Synthesis; pp. 3-284 in The Peptides: Analysis, Synthesis, Biology. Vol. 2: Special Methods in Peptide Synthesis, Part A., Merrifield et al. (1963) J. Am. Chem. Soc., 85: 2149-2156, and Stewart et al. (1984) Solid Phase Peptide Synthesis, 2nd ed. Pierce Chem. Co., Rockford, Ill.
B) Recombinant Expression of Antibodies.
In certain preferred embodiments, the antibodies of this invention (e.g., A5, F5B6H2, etc.), or variants thereof, and/or bispecific moieties, etc., are prepared using standard techniques well known to those of skill in the art. Using the sequence information provided herein, nucleic acids encoding the desired antibody can be chemically synthesized according to a number of standard methods known to those of skill in the art. Oligonucleotide synthesis, is preferably carried out on commercially available solid phase oligonucleotide synthesis machines (Needham-VanDevanter et al. (1984) Nucleic Acids Res. 12: 6159-6168) or manually synthesized using the solid phase phosphoramidite triester method described by Beaucage et. al. (Beaucage et. al. (1981) Tetrahedron Letts. 22(20): 1859-1862). Alternatively, nucleic acids encoding the antibody can be amplified and/or cloned according to standard methods.
Molecular cloning techniques to achieve these ends are known in the art. A wide variety of cloning and in vitro amplification methods are suitable for the construction of recombinant nucleic acids. Examples of these techniques and instructions sufficient to direct persons of skill through many cloning exercises are found in Berger and Kimmel, Guide to Molecular Cloning Techniques, Methods in Enzymology volume 152 Academic Press, Inc., San Diego, Calif. (Berger); Sambrook et al. (1989) Molecular Cloning—A Laboratory Manual (2nd ed.) Vol. 1-3, Cold Spring Harbor Laboratory, Cold Spring Harbor Press, NY, (Sambrook); and Current Protocols in Molecular Biology, F. M. Ausubel et al., eds., Current Protocols, a joint venture between Greene Publishing Associates, Inc. and John Wiley & Sons, Inc., (1994 Supplement) (Ausubel). Methods of producing recombinant immunoglobulins are also known in the art. See, Cabilly, U.S. Pat. No. 4,816,567; and Queen et al. (1989) Proc. Natl Acad. Sci. USA 86: 10029-10033. In addition, detailed protocols for the expression of antibodies are also provided by Liu et al. (2004) Cancer Res. 64: 704-710, Poul et al. (2000) J. Mol. Biol. 301: 1149-1161, and the like.
The chimeric and/or bispecific, and/or polyspecific moieties described herein can be prepared using a variety of methods. For example, antibodies can be prepared separately (e.g., using chemical protein synthesis, recombinant expression methods, hybridoma technology, etc.) and then chemically attached to each other, either directly or through a linker. Where the antibody and “effector” are single chain peptides the chimeric moieties can be chemically synthesized, or more preferably recombinantly expressed.
Means of chemically conjugating molecules are well known to those of skill in the art. The procedures for chemically coupling two antibodies are straightforward. Polypeptides typically contain variety of functional groups; e.g., carboxylic acid (COOH) or free amine (—NH2) groups, that are available for reaction with a suitable functional group on the corresponding antibody or on a linker.
Alternatively, the antibodies (and/or other effector(s)) can be derivatized to expose or attach additional reactive functional groups. The derivatization can involve attachment of any of a number of linker molecules such as those available from Pierce Chemical Company, Rockford Ill. A variety of suitable linkers are known to those of skill in the art (see, e.g., European Patent Application No. 188,256; U.S. Pat. Nos. 4,671,958, 4,659,839, 4,414,148, 4,699,784; 4,680,338; 4,569,789; and 4,589,071; and Borlinghaus et al. (1987) Cancer Res. 47: 4071-4075) and suitable linkers are also described below with respect to the coupling of effectors to bispecific antibodies.
In certain preferred embodiments of the invention, the bs-scFv antibody molecules are produced by expression of recombinant antibody fragments produced in host cells. The genes for several of the scFv molecules that target various epitopes on members of the EGFR protein family have been cloned (see, e.g. Tables and Figures herein, and Schier et al. (1996) J. Mol. Biol., (1): 28-43) and pairs (or other combinations) of these scFv genes can be operably linked directly or via a linker molecule. The resulting nucleic acid molecules encoding the bs-scFv antibody fragments are inserted into expression vectors and introduced into host cells. The resulting bs-scFv antibody molecules are then isolated and purified from the expression system.
In certain preferred embodiments of the invention, the scFv antibody molecules are paired together with a novel linker molecule designed to protect against proteolytic degradation of the bs-scFv antibody molecules. This linker typically lacks a proteolytic cleavage site and is typically characterized by containing primarily neutral (non-charged) amino acids. One such linker has the sequence: Asn Ser Gly Ala Gly Thr Ser Gly Ser Gly Ala Ser Gly Glu Gly Ser Gly Ser Lys Leu (SEQ ID NO:272).
The scFv antibodies provided in Table 2 are incorporated into new bs-scFv based upon the following factors: (1) descending affinity for a given target, (2) the lack of cross-reactive epitopes (as determined by binding inhibition and sandwich assays on a BIAcore), (3) combinations that target EGFR family member pairs that have not yet been paired, and (4) inclusion of scFv arms that have led to growth inhibition and altered signal transduction when employed in other bs-scFv combinations.
The purity of the bs-scFv antibody molecules of the invention can be assessed using standard methods known to those of skill in the art, including, but not limited to, ELISA, immunohistochemistry, ion-exchange chromatography, affinity chromatography, immobilized metal affinity chromatography (IMAC), size exclusion chromatography, polyacrylamide gel electrophoresis (PAGE), western blotting, surface plasmon resonance and mass spectroscopy.
Using the antibodies, nucleic acid sequences, and other teaching provided herein, bispecific or polyspecific antibodies of this invention can be recombinantly expressed using routine methods such as those set forth in Sambrook et al. (1989) Molecular Cloning, Cold Spring Harbor Laboratory, or Ausubel et al. (eds) (1997) Current Protocols in Molecular Biology, John Wiley & Sons N.Y. In addition illustrative methods of producing recombinant bispecific single chain antibodies of this invention are set forth in the Examples. To the extent that specific materials are mentioned, it is merely for purposes of illustration and is not intended to limit the invention.
III. Chimeric Moieties.
In many embodiments, the antibodies described herein are capable of inhibiting cancer cell growth and/or proliferation without the use of any additional “effector”. However, in certain embodiments, antibodies and/or the bispecific antibodies and/or polyspecific antibodies are additionally coupled to an effector thereby forming chimeric moieties that preferentially target/deliver the effector to a cell overexpressing the EGFR family member or members.
Since EGFR proteins are often found in upregulated in cancer cells, these proteins can be can be exploited as target(s) for the efficient and specific delivery of an effector (e.g., an effector molecule such as a cytotoxin, a radiolabel, etc.) to various cancer cells (e.g., isolated cells, metastatic cells, solid tumor cells, etc.), in particular to epithelial cancer cells (e.g., breast cancer cells). The target EGFR protein(s) need not exist solely on cancer cells to provide an effective target. Differential expression of EGFR on cancer cells, as compared to healthy cells, is sufficient to provide significant and useful targeting advantage, i.e. resulting in preferential delivery of the effector moiety to and/or into the target (e.g., cancer) cell.
In certain preferred embodiments, antibodies, and/or the bispecific or polyspecific antibodies of this invention are utilized in a “pretargeting” strategy (resulting in formation of a chimeric moiety at the target site after administration of the effector moiety) or in a “targeting” strategy where the bispecific and/or polyspecific antibody is coupled to an effector molecule prior to use to provide a chimeric moiety.
A chimeric molecule or chimeric composition or chimeric moiety refers to a molecule or composition wherein two or more molecules or compositions that exist separately in their native state are joined together to form a single molecule moiety or composition having the desired functionality of its constituent members. Typically, one of the constituent molecules of a chimeric moiety is a “targeting molecule”. i.e., in the present case an antibody that specifically binds a member of the EGFR family, a bispecific antibody, and/or a polyspecific antibody that specifically binds one or more members of the EGFR family.
It will be noted that in certain embodiments single antibody of this invention can be regarded as a targeting moiety that can be attached to an effector. When the effector is a second antibody this forms a chimeric moiety that can be a bispecific antibody. In other embodiments, the bispecific and/or polyspecific constructs (while themselves chimeric moieties) are used as a targeting moiety and are attached to a “third” effector. Thus use of a polyspecific targeting moiety can, in certain instances, improve specificity for the target cell(s).
As indicated above, the typically chimeric moiety comprises an a targeting moiety (e.g., an antibody, bispecific antibody, etc.) attached to an “effector”. The effector refers to a molecule or group of molecules that is to be specifically transported to (or into) the target cell (e.g., a cell overexpressing an EGFR family member). The effector molecule typically has a characteristic activity that is to be delivered to the target cell. Effector molecules include, but are not limited to cytotoxins, labels, radionuclides, ligands, antibodies, drugs, liposomes, and the like.
In certain embodiments, the effector is a detectable label, with preferred detectable labels including radionuclides. Among the radionuclides and labels useful in the radionuclide-chelator—(e.g., biotin) conjugates of the present invention, gamma-emitters, positron-emitters, x-ray emitters and fluorescence-emitters are suitable for localization, diagnosis and/or staging, and/or therapy, while beta and alpha-emitters and electron and neutron-capturing agents, such as boron and uranium, also can be used for therapy.
The detectable labels can be used in conjunction with an external detector and/or an internal detector and provide a means of effectively localizing and/or visualizing, e.g., cancer cells overexpressing one or more EGFR family members. Such detection/visualization can be useful in various contexts including, but not limited to pre-operative and intraoperative settings. Thus, in certain embodiment this invention relates to a method of intraoperatively detecting and locating tissues having EGFR family markers in the body of a mammal. These methods typically involve administering to the mammal a composition comprising, in a quantity sufficient for detection by a detector (e.g., a gamma detecting probe), a bispecific and/or polyspecific antibody of this invention labeled with a detectable label (e.g., anti-EGFR family member antibodies of this invention labeled with a radioisotope, e.g., 161Tb, 123I, 125I, and the like), and, after allowing the active substance to be taken up by the target tissue, and preferably after blood clearance of the label, subjecting the mammal to a radioimmunodetection technique in the relevant area of the body, e.g., by using a gamma detecting probe.
The chimeric moiety comprising an label-bound to an antibody or bispecific antibody of this invention can be used in the technique of radioguided surgery, wherein relevant tissues in the body of a subject can be detected and located intraoperatively by means of a detector, e.g., a gamma detecting probe. The surgeon can, intraoperatively, use this probe to find the tissues in which uptake of the compound labeled with a radioisotope, that is, e.g., a low-energy gamma photon emitter, has taken place.
In addition to detectable labels, preferred effectors include cytotoxins (e.g., Pseudomonas exotoxin, ricin, abrin, Diphtheria toxin, and the like), or cytotoxic drugs or prodrugs, in which case the chimeric moiety can act as a potent cell-killing agent specifically targeting the cytotoxin to cells bearing the EGFR family member(s).
In still other embodiments, the effector can include a liposome encapsulating a drug (e.g., an anti-cancer drug such as doxorubicin, vinblastine, taxol, etc.), an antigen that stimulates recognition of the bound cell by components of the immune system, an antibody that specifically binds immune system components and directs them to the target cell(s), and the like.
A) The Bispecific or Polyspecific Anti-EGFR Family Member Targeting Molecule.
In preferred embodiments, of the methods and compositions of this invention, the targeting moiety is an antibody and/or a bispecific and/or polyspecific antibody that specifically binds to one or more members of the EGFR family as described herein. The antibody, bispecific, and/or polyspecific antibody can comprise full-length antibodies, antibody fragment(s) (e.g., Fv, Fab, etc.), and/or single chain antibodies (e.g., scFv).
B) Certain Preferred Effectors.
1) Imaging Compositions.
In certain embodiments, the chimeric molecules of this invention can be used to direct detectable labels to a tumor site. This can facilitate tumor detection and/or localization. In certain particularly preferred embodiments, the effector component of the chimeric molecule is a “radiopaque” label, e.g., a label that can be easily visualized using x-rays. Radiopaque materials are well known to those of skill in the art. The most common radiopaque materials include iodide, bromide or barium salts. Other radiopaque materials are also known and include, but are not limited to organic bismuth derivatives (see, e.g., U.S. Pat. No. 5,939,045), radiopaque polyurethanes (see U.S. Pat. No. 5,346,9810, organobismuth composites (see, e.g., U.S. Pat. No. 5,256,334), radio-opaque barium polymer complexes (see, e.g., U.S. Pat. No. 4,866,132), and the like.
The antibodies (e.g., monospecific, bispecific and/or polyspecific antibodies of this invention) can be coupled directly to the radiopaque moiety or they can be attached to a “package” (e.g., a chelate, a liposome, a polymer microbead, etc.) carrying or containing the radiopaque material as described below.
In addition to radiopaque labels, other labels are also suitable for use in this invention. Detectable labels suitable for use as the effector molecule component of the chimeric molecules of this invention include any composition detectable by spectroscopic, photochemical, biochemical, immunochemical, electrical, optical or chemical means. Useful labels in the present invention include magnetic beads (e.g., Dynabeads™), fluorescent dyes (e.g., fluorescein isothiocyanate, texas red, rhodamine, green fluorescent protein, and the like), radiolabels (e.g., 3H, 125I, 35S, 14C, or 32P), enzymes (e.g., horse radish peroxidase, alkaline phosphatase and others commonly used in an ELISA), and colorimetric labels such as colloidal gold or colored glass or plastic (e.g., polystyrene, polypropylene, latex, etc.) beads.
Various preferred radiolabels include, but are not limited to 99Tc, 203Pb, 67Ga, 68Ga, 72As, 111In, 113mIn, 97Ru, 62Cu, 641Cu, 52Fe, 52mMn, 51Cr, 186R, 188Re, 77As, 90Y, 67Cu, 169Er, 121Sn, 127Te, 142Pr, 143Pr, 198Au, 199Au, 161Tb, 109Pd, 165Dy, 149Pm, 151Pm, 153Sm, 157Gd, 159Gd, 166Ho, 172Tm, 169Yb, 175Yb, 177Lu, 105Rh, and 111Ag.
Means of detecting such labels are well known to those of skill in the art. Thus, for example, radiolabels may be detected using photographic film, scintillation detectors, and the like. Fluorescent markers may be detected using a photodetector to detect emitted illumination. Enzymatic labels are typically detected by providing the enzyme with a substrate and detecting the reaction product produced by the action of the enzyme on the substrate, and colorimetric labels are detected by simply visualizing the colored label.
In certain specific embodiments, this invention contemplates the use of immunoconjugates (chimeric moieties) for the detection of tumors and/or other cancer cells. Thus, for example, the bispecific antibodies of this invention can be conjugated to gamma-emitting radioisotopes (e.g., Na-22, Cr-51, Co-60, Tc-99, I-125, I-131, Cs-137, GA-67, Mo-99) for detection with a gamma camera, to positron emitting isotopes (e.g., C-11, N-13, O-15, F-18, and the like) for detection on a Positron Emission Tomography (PET) instrument, and to metal contrast agents (e.g., Gd containing reagents, Eu containing reagents, and the like) for magnetic resonance imaging (MRI), In addition, the bispecific antibodies of this invention can be used in traditional immunohistochemistry (e.g., fluorescent labels, nanocrystal labels, enzymatic and colormetric labels etc.).
2) Radiosensitizers.
In another embodiment, the effector can be a radiosensitizer that enhances the cytotoxic effect of ionizing radiation (e.g., such as might be produced by 60Co or an x-ray source) on a cell. Numerous radiosensitizing agents are known and include, but are not limited to benzoporphyrin derivative compounds (see, e.g., U.S. Pat. No. 5,945,439), 1,2,4-benzotriazine oxides (see, e.g., U.S. Pat. No. 5,849,738), compounds containing certain diamines (see, e.g., U.S. Pat. No. 5,700,825), BCNT (see, e.g., U.S. Pat. No. 5,872,107), radiosensitizing nitrobenzoic acid amide derivatives (see, e.g., U.S. Pat. No. 4,474,814), various heterocyclic derivatives (see, e.g., U.S. Pat. No. 5,064,849), platinum complexes (see, e.g., U.S. Pat. No. 4,921,963), and the like.
3) Ligands.
In certain embodiments the effector molecule can also comprise a ligand, an epitope tag, or an antibody. Particularly preferred ligand and antibodies are those that bind to surface markers on immune cells. Chimeric molecules utilizing such antibodies as effector molecules act as bifunctional linkers establishing an association between the immune cells bearing binding partner for the ligand or antibody and the tumor cells expressing the EGFR family member(s).
3) Chelates
Many of the pharmaceuticals and/or radiolabels described herein are provided as a chelate, particularly where a pre-targeting strategy is utilized. The chelating molecule is typically coupled to a molecule (e.g., biotin, avidin, streptavidin, etc.) that specifically binds an epitope tag attached to the antibody, and/or bispecific, and/or polyspecific antibody.
Chelating groups are well known to those of skill in the art. In certain embodiments, chelating groups are derived from ethylene diamine tetra-acetic acid (EDTA), diethylene triamine penta-acetic acid (DTPA), cyclohexyl 1,2-diamine tetra-acetic acid (CDTA), ethyleneglycol-O,O′-bis(2-aminoethyl)-N,N,N′,N′-tetra-acetic acid (EGTA), N,N-bis(hydroxybenzyl)-ethylenediamine-N,N′-diacetic acid (HBED), triethylene tetramine hexa-acetic acid (TTHA), 1,4,7,10-tetraazacyclododecane-N,N′-,N″,N′″-tetra-acetic acid (DOTA), hydroxyethyldiamine triacetic acid (HEDTA), 1,4,8,11-tetra-azacyclotetradecane-N,N′,N″,N′″-tetra-acetic acid (TETA), substituted DTPA, substituted EDTA, and the like.
Examples of certain preferred chelators include unsubstituted or, substituted 2-iminothiolanes and 2-iminothiacyclohexanes, in particular 2-imino-4-mercaptomethylthiolane, and SAPS(N-(4-[211At] astatophenethyl) succinamate).
One chelating agent, 1,4,7,10-tetraazacyclododecane-N,N,N″,N′″-tetraacetic acid (DOTA), is of particular interest because of its ability to chelate a number of diagnostically and therapeutically important metals, such as radionuclides and radiolabels.
Conjugates of DOTA and proteins such as antibodies have been described. For example, U.S. Pat. No. 5,428,156 teaches a method for conjugating DOTA to antibodies and antibody fragments. To make these conjugates, one carboxylic acid group of DOTA is converted to an active ester which can react with an amine or sulfhydryl group on the antibody or antibody fragment. Lewis et al. (1994) Bioconjugate Chem. 5: 565-576, describes a similar method wherein one carboxyl group of DOTA is converted to an active ester, and the activated DOTA is mixed with an antibody, linking the antibody to DOTA via the epsilon-amino group of a lysine residue of the antibody, thereby converting one carboxyl group of DOTA to an amide moiety.
Alternatively the chelating agent can be coupled, directly or through a linker, to an epitope tag or to a moiety that binds an epitope tag. Conjugates of DOTA and biotin have been described (see, e.g., Su (1995) J. Nucl. Med., 36 (5 Suppl):154P, which discloses the linkage of DOTA to biotin via available amino side chain biotin derivatives such as DOTA-LC-biotin or DOTA-benzyl-4-(6-amino-caproamide)-biotin). Yau et al., WO 95/15335, disclose a method of producing nitro-benzyl-DOTA compounds that can be conjugated to biotin. The method comprises a cyclization reaction via transient projection of a hydroxy group; tosylation of an amine; deprotection of the transiently protected hydroxy group; tosylation of the deprotected hydroxy group; and intramolecular tosylate cyclization. Wu et al. (1992) Nucl. Med. Biol., 19(2): 239-244 discloses a synthesis of macrocylic chelating agents for radiolabeling proteins with 111IN and 90Y. Wu et al. makes a labeled DOTA-biotin conjugate to study the stability and biodistribution of conjugates with avidin, a model protein for studies. This conjugate was made using a biotin hydrazide which contained a free amino group to react with an in situ generated activated DOTA derivative.
4) Cytotoxins.
In various embodiments the effector comprises a cytotoxin. Illustrative cytotoxins include, but are not limited to Pseudomonas exotoxins, Diphtheria toxins, ricin, abrin, and variants thereof.
Pseudomonas exotoxin A (PE) is an extremely active monomeric protein (molecular weight 66 kD), secreted by Pseudomonas aeruginosa, which inhibits protein synthesis in eukaryotic cells through the inactivation of elongation factor 2 (EF-2) by catalyzing its ADP-ribosylation (catalyzing the transfer of the ADP ribosyl moiety of oxidized NAD onto EF-2).
The toxin contains three structural domains that act in concert to cause cytotoxicity. Domain Ia (amino acids 1-252) mediates cell binding. Domain II (amino acids 253-364) is responsible for translocation into the cytosol and domain III (amino acids 400-613) mediates ADP ribosylation of elongation factor 2, which inactivates the protein and causes cell death. The function of domain Ib (amino acids 365-399) remains undefined, although a large part of it, amino acids 365-380, can be deleted without loss of cytotoxicity. See Siegall et al. (1989) J. Biol. Chem. 264: 14256-14261.
Where the targeting molecule (e.g., anti-EGFR family member antibody) is fused to PE, a preferred PE molecule is one in which domain Ia (amino acids 1 through 252) is deleted and amino acids 365 to 380 have been deleted from domain Ib. However all of domain Ib and a portion of domain II (amino acids 350 to 394) can be deleted, particularly if the deleted sequences are replaced with a linking peptide such as GGGGS (SEQ ID NO:273).
In addition, the PE molecules can be further modified using site-directed mutagenesis or other techniques known in the art, to alter the molecule for a particular desired application. Means to alter the PE molecule in a manner that does not substantially affect the functional advantages provided by the PE molecules described here can also be used and such resulting molecules are intended to be covered herein.
For maximum cytotoxic properties several modifications to the molecule can be made. An appropriate carboxyl terminal sequence to the recombinant molecule is preferred to translocate the molecule into the cytosol of target cells. Amino acid sequences which have been found to be effective include, REDLK (SEQ ID NO:274) (as in native PE), REDL (SEQ ID NO:275), RDEL (SEQ ID NO:276), or KDEL (SEQ ID NO:277), repeats of those, or other sequences that function to maintain or recycle proteins into the endoplasmic reticulum, referred to here as “endoplasmic retention sequences”. See, for example, Chaudhary et al. (1991) Proc. Natl. Acad. Sci. USA 87:308-312 and Seetharam et al, J. Biol. Chem. 266: 17376-17381. Preferred forms of PE comprise the PE molecule designated PE38QQR. (Debinski et al. Bioconj. Chem., 5: 40 (1994)), and PE4E (see, e.g., Chaudhary et al. (1995) J. Biol. Chem., 265: 16306).
Methods of cloning genes encoding PE fused to various ligands are well known to those of skill in the art (see, e.g., Siegall et al. (1989) FASEB J., 3: 2647-2652; and Chaudhary et al. (1987) Proc. Natl. Acad. Sci. USA, 84: 4538-4542).
Like PE, diphtheria toxin (DT) kills cells by ADP-ribosylating elongation factor 2 thereby inhibiting protein synthesis. Diphtheria toxin, however, is divided into two chains, A and B, linked by a disulfide bridge. In contrast to PE, chain B of DT, which is on the carboxyl end, is responsible for receptor binding and chain A, which is present on the amino end, contains the enzymatic activity (Uchida et al. (1972) Science, 175: 901-903; Uchida et al. (1973) J. Biol. Chem., 248: 3838-3844).
In a preferred embodiment, the targeting molecule-Diphtheria toxin fusion proteins of this invention have the native receptor-binding domain removed by truncation of the Diphtheria toxin B chain. Particularly preferred is DT388, a DT in which the carboxyl terminal sequence beginning at residue 389 is removed. Chaudhary et al. (1991) Bioch. Biophys. Res. Comm., 180: 545-551. Like the PE chimeric cytotoxins, the DT molecules may be chemically conjugated to the MUC-1 antibody, but, in certain preferred embodiments, the targeting molecule will be fused to the Diphtheria toxin by recombinant means (see, e.g., Williams et al. (1990) J. Biol. Chem. 265: 11885-11889).
5) Other Therapeutic Moieties.
Other suitable effector molecules include pharmacological agents or encapsulation systems containing various pharmacological agents. Thus, the targeting molecule of the chimeric molecule may be attached directly to a drug that is to be delivered directly to the tumor. Such drugs are well known to those of skill in the art and include, but are not limited to, doxorubicin, vinblastine, genistein, an antisense molecule, an RNAi molecule, and the like.
Alternatively, the effector molecule may be an encapsulation system, such as a viral capsid, a liposome, or micelle that contains a therapeutic composition such as a drug, a nucleic acid (e.g., an antisense nucleic acid), or another therapeutic moiety that is preferably shielded from direct exposure to the circulatory system (e.g. an anti-cancer drug such as abraxane, doxorubicin, pamidronate disodium, anastrozole, exemestane, cyclophosphamide, epirubicin, toremifene, letrozole, trastuzumab, megestroltamoxifen, paclitaxel, docetaxel, capecitabine, goserelin acetate, zoledronic acid, vinblastine, etc.), an antigen that stimulates recognition of the bound cell by components of the immune system, an antibody that specifically binds immune system components and directs them to the prostate cancer, and the like.
C) Attachment of the Targeting Molecule to the Effector Molecule.
One of skill will appreciate that the antibody, and/or bispecific and/or polyspecific antibody of this invention and the effector moieties can typically be joined together in any order. Thus, for example, where the targeting molecule is a single chain protein the effector molecule may be joined to either the amino or carboxy termini of the targeting molecule. The effector can also be joined to an internal region of the monospecific and/or bispecific and/or polyspecific antibody, or conversely. Similarly, the monospecific, and/or bispecific and/or polyspecific antibody can be joined to an internal location or a terminus of the effector molecule. In any case, attachment points are selected that do not interfere with the respective activities of the monospecific, bispecific and/or polyspecific antibody or the effector.
The bispecific and/or polyspecific antibody and the effector molecule can be attached by any of a number of means well known to those of skill in the art. Typically the effector molecule is conjugated, either directly or through a linker (spacer), to the bispecific antibody. However, where both the effector molecule and the bispecific antibody are both polypeptides it is preferable to recombinantly express the chimeric molecule as a single-chain fusion protein.
1) Conjugation of the Effector Molecule to the Targeting Molecule.
In one embodiment, the antibody, bispecific and/or polyspecific antibody is chemically conjugated to the effector molecule (e.g., a cytotoxin, a label, a ligand, a drug, an antibody, a liposome, etc.). Means of chemically conjugating molecules are well known to those of skill.
The procedure for attaching an agent to an antibody or other polypeptide targeting molecule will vary according to the chemical structure of the agent. Polypeptides typically contain variety of functional groups; e.g., carboxylic acid (COOH) or free amine (—NH2) groups, which are available for reaction with a suitable functional group on an effector molecule to bind the effector thereto.
Alternatively, the bispecific antibody and/or effector molecule can be derivatized to expose or attach additional reactive functional groups. The derivatization can involve attachment of any of a number of linker molecules such as those available from Pierce Chemical Company, Rockford Ill.
A “linker”, as used herein, is a molecule that is used to join the targeting molecule to the effector molecule. The linker is capable of forming covalent bonds to both the targeting molecule and to the effector molecule. Suitable linkers are well known to those of skill in the art and include, but are not limited to, straight or branched-chain carbon linkers, heterocyclic carbon linkers, or peptide linkers. Where a monospecific, and/or bispecific and/or polyspecific antibody and the effector molecule are polypeptides, the linkers can be joined to the constituent amino acids through their side groups (e.g., through a disulfide linkage to cysteine). However, in a preferred embodiment, the linkers will be joined to the alpha carbon amino and carboxyl groups of the terminal amino acids.
A bifunctional linker having one functional group reactive with a group on a particular agent, and another group reactive with an antibody, can be used to form the desired immunoconjugate. Alternatively, derivatization can involve chemical treatment of the antibody, e.g., glycol cleavage of a sugar moiety of a glycoprotein antibody with periodate to generate free aldehyde groups. The free aldehyde groups on the antibody can be reacted with free amine or hydrazine groups on an agent to bind the agent thereto. (See U.S. Pat. No. 4,671,958). Procedures for generation of free sulfhydryl groups on polypeptide, such as antibodies or antibody fragments, are also known (See U.S. Pat. No. 4,659,839).
Many procedures and linker molecules for attachment of various compounds including radionuclide metal chelates, toxins and drugs to proteins such as antibodies are known (see, e.g., European Patent Application No. 188,256; U.S. Pat. Nos. 4,671,958, 4,659,839, 4,414,148, 4,699,784; 4,680,338; 4,569,789; and 4,589,071; and Borlinghaus et al. (1987) Cancer Res. 47: 4071-4075). In particular, production of various immunotoxins is well-known within the art and can be found, for example in “Monoclonal Antibody-Toxin Conjugates: Aiming the Magic Bullet,” Thorpe et al., Monoclonal Antibodies in Clinical Medicine, Academic Press, pp. 168-190 (1982), Waldmann (1991) Science, 252: 1657, U.S. Pat. Nos. 4,545,985 and 4,894,443.
In some circumstances, it is desirable to free the effector molecule from the antibody (e.g., monospecific, bispecific and/or polyspecific antibody) when the chimeric moiety has reached its target site. Therefore, chimeric conjugates comprising linkages that are cleavable in the vicinity of the target site can be used when the effector is to be released at the target site. Cleaving of the linkage to release the agent from the antibody may be prompted by enzymatic activity or conditions to which the immunoconjugate is subjected either inside the target cell or in the vicinity of the target site. When the target site is a tumor, a linker which is cleavable under conditions present at the tumor site (e.g., when exposed to tumor-associated enzymes or acidic pH) may be used.
A number of different cleavable linkers are known to those of skill in the art (see, e.g., U.S. Pat. Nos. 4,618,492; 4,542,225, and 4,625,014). The mechanisms for release of an agent from these linker groups include, for example, irradiation of a photolabile bond and acid-catalyzed hydrolysis. U.S. Pat. No. 4,671,958, for example, includes a description of immunoconjugates comprising linkers that are cleaved at the target site in vivo by the proteolytic enzymes of the patient's complement system. In view of the large number of methods that have been reported for attaching a variety of radiodiagnostic compounds, radiotherapeutic compounds, drugs, toxins, and other agents to antibodies one skilled in the art will be able to determine a suitable method for attaching a given agent to an antibody or other polypeptide.
2 Conjugation of Chelates.
In certain preferred embodiments, the effector comprises a chelate that is attached to an antibody or to an epitope tag. The monospecific, and/or bispecific, and/or polyspecific antibody bears a corresponding epitope tag or antibody so that simple contacting of antibody to the chelate results in attachment of the antibody to the effector. The combining step can be performed after the moiety is used (pretargeting strategy) or the target tissue can be bound to the monospecific, bispecific, and/or polyspecific antibody before the chelate is delivered. Methods of producing chelates suitable for coupling to various targeting moieties are well known to those of skill in the art (see, e.g., U.S. Pat. Nos. 6,190,923, 6,187,285, 6,183,721, 6,177,562, 6,159,445, 6,153,775, 6,149,890, 6,143,276, 6,143,274, 6,139,819, 6,132,764, 6,123,923, 6,123,921, 6,120,768, 6,120,751, 6,117,412, 6,106,866, 6,096,290, 6,093,382, 6,090,800, 6,090,408, 6,088,613, 6,077,499, 6,075,010, 6,071,494, 6,071,490, 6,060,040, 6,056,939, 6,051,207, 6,048,979, 6,045,821, 6,045,775, 6,030,840, 6,028,066, 6,022,966, 6,022,523, 6,022,522, 6,017,522, 6,015,897, 6,010,682, 6,010,681, 6,004,533, and 6,001,329).
3) Production of Fusion Proteins.
Where antibody and/or the effector molecule are both single chain proteins and relatively short (i.e., less than about 50 amino acids) they can be synthesized using standard chemical peptide synthesis techniques. Where both components are relatively short the chimeric moiety can be synthesized as a single contiguous polypeptide. Alternatively the antibody and the effector molecule may be synthesized separately and then fused by condensation of the amino terminus of one molecule with the carboxyl terminus of the other molecule thereby forming a peptide bond. Alternatively, the monospecific, bispecific and/or polyspecific antibody and effector molecules can each be condensed with one end of a peptide spacer molecule thereby forming a contiguous fusion protein.
Solid phase synthesis in which the C-terminal amino acid of the sequence is attached to an insoluble support followed by sequential addition of the remaining amino acids in the sequence is the preferred method for the chemical synthesis of the polypeptides of this invention. Techniques for solid phase synthesis are described by Barany and Merrifield, Solid-Phase Peptide Synthesis; pp. 3-284 in The Peptides: Analysis, Synthesis, Biology. Vol. 2: Special Methods in Peptide Synthesis, Part A., Merrifield, et al. J. Am. Chem. Soc., 85: 2149-2156 (1963), and Stewart et al., Solid Phase Peptide Synthesis, 2nd ed. Pierce Chem. Co., Rockford, Ill. (1984).
In a preferred embodiment, the where the monospecific, and/or bispecific, and/or polyspecific antibody is a single chain polypeptide and the effector is a polypeptide, chimeric fusion proteins of the present invention are synthesized using recombinant DNA methodology. Generally this involves creating a DNA sequence that encodes the fusion protein, placing the DNA in an expression cassette under the control of a particular promoter, expressing the protein in a host, isolating the expressed protein and, if required, renaturing the protein.
DNA encoding the fusion proteins (e.g., ALM-PE38QQR) of this invention may be prepared by any suitable method, including, for example, cloning and restriction of appropriate sequences or direct chemical synthesis by methods such as the phosphotriester method of Narang et al. (1979) Meth. Enzymol. 68: 90-99; the phosphodiester method of Brown et al. (1979) Meth. Enzymol. 68: 109-151; the diethylphosphoramidite method of Beaucage et al. (1981) Tetra. Lett., 22: 1859-1862; and the solid support method of U.S. Pat. No. 4,458,066.
Chemical synthesis produces a single stranded oligonucleotide. This may be converted into double stranded DNA by hybridization with a complementary sequence, or by polymerization with a DNA polymerase using the single strand as a template. One of skill would recognize that while chemical synthesis of DNA is limited to sequences of about 100 bases, longer sequences can be obtained by the ligation of shorter sequences.
Alternatively, subsequences can be cloned and the appropriate subsequences cleaved using appropriate restriction enzymes. The fragments can then be ligated to produce the desired DNA sequence.
In a preferred embodiment, DNA encoding fusion proteins of the present invention may be cloned using DNA amplification methods such as polymerase chain reaction (PCR). Thus, for example, the nucleic acid encoding a bispecific and/or polyspecific antibody is PCR amplified, using a sense primer containing the restriction site for NdeI and an antisense primer containing the restriction site for HindIII. This produces a nucleic acid encoding antibody and having terminal restriction sites. A PE38QQR fragment can be cut out of the plasmid pWDMH4-38QQR or plasmid pSGC242FdN1 described by Debinski et al. (1994) Int. J. Cancer, 58: 744-748. Ligation of the antibody and PE38QQR sequences and insertion into a vector produces a vector encoding the monospecific, bispecific and/or polyspecific antibody joined to the amino terminus of PE38QQR (position 253 of PE). The two molecules are joined by a three amino acid junction consisting of glutamic acid, alanine, and phenylalanine introduced by the restriction site.
While the two molecules are preferably essentially directly joined together, one of skill will appreciate that the molecules may be separated by a peptide spacer consisting of one or more amino acids. Generally the spacer will have no specific biological activity other than to join the proteins or to preserve some minimum distance or other spatial relationship between them. However, the constituent amino acids of the spacer can be selected to influence some property of the molecule such as the folding, net charge, or hydrophobicity.
The nucleic acid sequences encoding the fusion proteins can be expressed in a variety of host cells, including E. coli, other bacterial hosts, yeast, and various higher eukaryotic cells such as the COS, CHO and HeLa cells lines and myeloma cell lines. The recombinant protein gene will be operably linked to appropriate expression control sequences for each host. For E. coli this includes a promoter such as the T7, trp, or lambda promoters, a ribosome binding site and preferably a transcription termination signal. For eukaryotic cells, the control sequences will include a promoter and preferably an enhancer derived from immunoglobulin genes, SV40, cytomegalovirus, etc., and a polyadenylation sequence, and may include splice donor and acceptor sequences.
The plasmids of the invention can be transferred into the chosen host cell by well-known methods such as calcium chloride transformation for E. coli and calcium phosphate treatment or electroporation for mammalian cells. Cells transformed by the plasmids can be selected by resistance to antibiotics conferred by genes contained on the plasmids, such as the amp, gpt, neo and hyg genes.
Once expressed, the recombinant fusion proteins can be purified according to standard procedures of the art, including ammonium sulfate precipitation, affinity columns, column chromatography, gel electrophoresis and the like (see, generally, R. Scopes (1982) Protein Purification, Springer-Verlag, N.Y.; Deutscher (1990) Methods in Enzymology Vol. 182: Guide to Protein Purification., Academic Press, Inc. N.Y.). Substantially pure compositions of at least about 90 to 95% homogeneity are preferred, and 98 to 99% or more homogeneity are most preferred for pharmaceutical uses. Once purified, partially or to homogeneity as desired, the polypeptides may then be used therapeutically.
One of skill in the art would recognize that after chemical synthesis, biological expression, or purification, the EGFR polypeptide targeted fusion protein can possess a conformation substantially different than the native conformations of the constituent polypeptides. In this case, it may be necessary to denature and reduce the polypeptide and then to cause the polypeptide to re-fold into the preferred conformation. Methods of reducing and denaturing proteins and inducing re-folding are well known to those of skill in the art (See, Debinski et al. (1993) J. Biol. Chem., 268: 14065-14070; Kreitman and Pastan (1993) Bioconjug. Chem., 4: 581-585; and Buchner, et al. (1992) Anal. Biochem., 205: 263-270).
One of skill would recognize that modifications can be made to the fusion proteins without diminishing their biological activity. Some modifications may be made to facilitate the cloning, expression, or incorporation of the targeting molecule into a fusion protein. Such modifications are well known to those of skill in the art and include, for example, a methionine added at the amino terminus to provide an initiation site, or additional amino acids placed on either terminus to create conveniently located restriction sites or termination codons.
IV. Uses of Bispecific Antibody Molecules and/or Chimeric Moieties:
The antibodies of this invention and the bispecific antibodies having affinity for two distinct antigens have broad applications in therapy and diagnosis. For example, the antibodies, and/or the bs-antibody molecules of the invention (e.g., bs-scFv)., can be used: (1) to directly alter the growth of tumors that overexpress members of the EGFR protein family; (2) in combination with other cytotoxic agents (e.g., chemotherapeutic agents, external beam radiation, targeted radioisotopes, and other antibodies or signal transduction inhibitors); and (3) to recruit a variety of different cytotoxic agents or effector cells directly to targeted tumor cells that express members of the EGFR protein family.
Targeting cytotoxic agents or effector cells to specific tumor cells utilizing the antibodies and/or bs-scFv antibody molecules of the invention provides added tumor-directed specificity due to the increased expression of these targets on tumor cells relative to normal tissue. In addition, the bispecific antibodies can bind to multiple receptors or receptor components, thereby cross-linking receptors or receptor components producing a cytotoxic and/or cytostatic effect. Antibody-based agents that only bind to one target on normal tissue will typically not crosslink the receptors and trigger cytotoxic results.
In certain embodiments the bispecific antibodies of this invention show higher avidity to the target cell(s) (as compared to single antibodies) which helps stabilize the antibody/target complex and provide long-term association of the antibody with the cell, thus providing added specificity for the agent on tumor cells that overexpress both targets.
In addition, the binding of antibodies to the members of the EGFR protein family often triggers the internalization of these proteins, making these antibodies effective platforms for the delivery of toxins, drugs, radioisotopes or other cytotoxic agents. For example, the bispecific antibody ALM mediates a reduction in the quantity of HER2/neu and HER3 on the surface of tumor cells, suggesting a similar internalization mechanism. Therefore, the combination of these bs-scFv molecules with cytotoxic or other agents (effectors), e.g., in a chimeric moiety, will result in effective delivery to cells that overexpress both targets, thus increasing the specificity and efficacy of the therapy. By incorporating additional sequences (e.g., Fc receptor targeting arms) that interact with effector cells, a similar increase in targeting specificity can also be incorporated into effector cell-based treatment strategies.
The antibodies or bispecific antibody molecules of the invention can also be used in gene therapy for direct targeting and internalization of nucleic acids encoding therapeutic agents (e.g., pseudomonas exotoxin, diphtheria toxin, various tumor suppressor genes, various labels, etc.), In addition, the bispecific antibodies can be conjugated, e.g., via a chelate to cytotoxic radioactive moieties (e.g., 211At) to radiation enhancing agents, and to various detectable labels (e.g., radio opaque labels). In addition, the bispecific antibody molecules can be coupled to lipids, liposomes, dendrimers, and the like. The lipids, liposomes and dendrimers can combine with and/or encapsulate various therapeutic moieties (e.g., anticancer drugs including, but not limited to, alkylating agents such as busulfan, chlorambucal, cis-platinum, cyanomorpholinodoxorubicin, etc., antimitotic agents such as allocolchicine, cohchicine, taxol, vinblastine, vincristine, and the like, topoisomerase I inhibitors such as camptothecin, aminocamptothecin, and the like, topoisomerase II inhibitors such as doxorubicin, amonafide, daunorubicin, deoxydoxorubicin, mitoxantrone, and the like, RNA/DNA antimetabolites such as acivicin, ftorafur, methotrexate, trimetrexate, and the like; DNA antimetabolites such as 2′deoxy-5-fluorouridine, cyclocytidine, guanazole, and the like). Lipids, liposomes and dendrimers can also complex with protein therapeutics, nucleic acids encoding, e.g., therapeutic moieties, and the like.
When used as a targeting component of a chimeric moiety, as described above, the antibodies and/or bispecific and/or polyspecific antibodies of this invention preferentially target/deliver the associated effector to the target cell(s) expressing the target EGFR proteins. By increasing the association (e.g., duration of contact or amount of contact) of the effector with the cell (in contact or close proximity), the antibodies of this invention increase the likelihood of the effector internalizing into the cell and/or exerting its characteristic activity on that cell.
Thus, for example, bispecific or polyspecific antibody targeted liposomes or other therapeutic vesicles (liposomes, viruses etc.) show increased exposure (duration/concentration) to target tumors. In an exemplary embodiment, liposomes can be studded by the bs-scFv antibody molecules of the invention to facilitate tumor specific targeting. Anti-cancer agents such as chemotherapeutic agents, antibodies, antisense molecules and/or radioisotopes may be encapsulated in liposomes so modified.
In another embodiment, the antibodies, bispecific antibodies, or polyspecific antibodies (e.g., bs-scFv antibody) can be used to direct gene therapy vectors, including but not limited to modified viruses, to cells that express both target antigens. Viruses can also be utilized to deliver the genes for these bs-scFv antibody molecules to tumor cells where they could be produced and secreted into the cellular microenvironment or, through the addition of additional intracellular targeting sequences, they could be turned into intrabodies that localize to specific cellular compartments and knockout the expression of their targets.
In addition, the molecules of the invention can be used to advantage to detect aberrant expression of members of the EGFR protein family. Such detection can lead to early diagnosis of cancers associated with aberrant tumor growth facilitated by these cell surface proteins. In general, the detection of immunocomplex formation is well known in the art and can be achieved through the application of numerous approaches. These methods are generally based upon the detection of a label or marker, such as any radioactive, fluorescent, biological or enzymatic tags or labels of standard use in the art. U.S. patents concerning the use of such labels include U.S. Pat. Nos. 3,817,837; 3,850,752; 3,939,350; 3,996,345; 4,277,437; 4,275,149 and 4,366,241. Of course, one may find additional advantages through the use of a secondary binding ligand such as a second antibody or a biotin/avidin ligand binding arrangement, as is known in the art.
V. Administration of Antibodies, Bispecific Antibodies and/or Chimeric Moieties.
A) Pharmaceutical Formulations.
The antibodies, bispecific antibodies, or other constructs of the present invention can be formulated as “bulk” compositions useful in the manufacture of non-pharmaceutical compositions (e.g., impure or non-sterile compositions) and/or and pharmaceutical compositions (i.e., compositions that are suitable for administration to a subject or patient (i.e., human or non-human subject) that can be used directly and/or in the preparation of unit dosage forms. In certain embodiments, such compositions comprise a therapeutically effective amount of one or more therapeutic agents (e.g., bispecific and/or polyspecific antibodies, and/or chimeric moieties comprising such antibodies) and a pharmaceutically acceptable carrier.
As indicated above, the agents of this invention can be used in a wide variety of contexts including, but not limited to the detection and/or imaging of tumors or cancer cells, inhibition of tumor growth and/or cancer cell growth and/or proliferation, and the like. One or more bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention can be administered by injection, that is, intravenously, intramuscularly, intracutaneously, subcutaneously, intraduodenally, or intraperitoneally. Also, in certain embodiments, the compounds can be administered by inhalation, for example, intranasally. Additionally, certain compounds can be administered orally, or transdermally.
In a specific embodiment, the term “pharmaceutically acceptable” means approved by a regulatory agency of the Federal or a state government or listed in the U.S. Pharmacopeia or other generally recognized pharmacopeia for use in animals, and more particularly in humans, or suitable for administration to an animal or human. The term “carrier” or refers to a diluent, adjuvant (e.g., Freund's adjuvant (complete and incomplete)), excipient, or vehicle with which the therapeutic is administered. Such pharmaceutical carriers can be sterile liquids, such as water and oils, including those of petroleum, animal, vegetable or synthetic origin, such as peanut oil, soybean oil, mineral oil, sesame oil and the like. Water is a preferred carrier when the pharmaceutical composition is administered intravenously. Saline solutions and aqueous dextrose and glycerol solutions can also be employed as liquid carriers, particularly for injectable solutions. Suitable pharmaceutical excipients include starch, glucose, lactose, sucrose, gelatin, malt, rice, flour, chalk, silica gel, sodium stearate, glycerol monostearate, talc, sodium chloride, dried skim milk, glycerol, propylene, glycol, water, ethanol and the like. The composition, if desired, can also contain minor amounts of wetting or emulsifying agents, or pH buffering agents. These compositions can take the form of solutions, suspensions, emulsion, tablets, pills, capsules, powders, sustained-release formulations and the like.
Generally, the ingredients of the compositions of the invention are supplied either separately or mixed together in unit dosage form, for example, as a dry lyophilized powder or water free concentrate in a hermetically sealed container such as an ampoule or sachette indicating the quantity of active agent. Where the composition is to be administered by infusion, it can be dispensed with an infusion bottle containing sterile pharmaceutical grade water or saline. Where the composition is administered by injection, an ampoule of sterile water for injection or saline can be provided so that the ingredients may be mixed prior to administration.
The compositions of the invention can be provided as neutral or salt forms. Pharmaceutically acceptable salts include those formed with anions such as those derived from hydrochloric, phosphoric, acetic, oxalic, tartaric acids, etc., and those formed with cations such as those derived from sodium, potassium, ammonium, calcium, ferric hydroxides, isopropylamine, triethylamine, 2-ethylamino ethanol, histidine, procaine, etc.
Pharmaceutical compositions comprising the bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention can be manufactured by means of conventional mixing, dissolving, granulating, dragee-making, levigating, emulsifying, encapsulating, entrapping or lyophilizing processes. Pharmaceutical compositions may be formulated in conventional manner using one or more physiologically acceptable carriers, diluents, excipients or auxiliaries that facilitate processing of the molecules into preparations that can be used pharmaceutically. Proper formulation is dependent upon the route of administration chosen.
For topical or transdermal administration, the bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention can be formulated as solutions, gels, ointments, creams, lotion, emulsion, suspensions, etc. as are well-known in the art. Systemic formulations include those designed for administration by injection, e.g., subcutaneous, intravenous, intramuscular, intrathecal or intraperitoneal injection, as well as those designed for transdermal, transmucosal, inhalation, oral or pulmonary administration.
For injection, the bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention can be formulated in aqueous solutions, preferably in physiologically compatible buffers such as Hanks's solution, Ringer's solution, or physiological saline buffer. The solution can contain formulatory agents such as suspending, stabilizing and/or dispersing agents. Alternatively, compositions comprising the iron chelating agent(s) can be in powder form for constitution with a suitable vehicle, e.g., sterile pyrogen-free water, before use.
For transmucosal administration, penetrants appropriate to the barrier to be permeated are used in the formulation. Such penetrants are generally known in the art.
For oral administration, the bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention can be readily formulated by combining the agent(s) with pharmaceutically acceptable carriers well known in the art. Such carriers enable the agent(s) to be formulated as tablets, pills, dragees, capsules, liquids, gels, syrups, slurries, suspensions and the like, for oral ingestion by a patient to be treated. For oral solid formulations such as, for example, powders, capsules and tablets, suitable excipients include fillers such as sugars, e.g., lactose, sucrose, mannitol and sorbitol; cellulose preparations such as maize starch, wheat starch, rice starch, potato starch, gelatin, gum tragacanth, methyl cellulose, hydroxypropylmethyl-cellulose, sodium carboxymethylcellulose, and/or polyvinylpyrrolidone (PVP); granulating agents; and binding agents. If desired, disintegrating agents may be added, such as the cross-linked polyvinylpyrrolidone, agar, or alginic acid or a salt thereof such as sodium alginate.
If desired, solid dosage forms may be sugar-coated or enteric-coated using standard techniques.
For oral liquid preparations such as, for example, suspensions, elixirs and solutions, suitable carriers, excipients or diluents include water, glycols, oils, alcohols, etc. Additionally, flavoring agents, preservatives, coloring agents and the like can be added.
For buccal administration, the iron chelating agent(s) can take the form of tablets, lozenges, etc. formulated in conventional manner.
For administration by inhalation, bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention are conveniently delivered in the form of an aerosol spray from pressurized packs or a nebulizer, with the use of a suitable propellant, e.g., dichlorodifluoromethane, trichlorofluoromethane, dichlorotetrafluoroethane, carbon dioxide or other suitable gas. In the case of a pressurized aerosol, the dosage unit may be determined by providing a valve to deliver a metered amount. Capsules and cartridges of gelatin for use in an inhaler or insufflator may be formulated containing a powder mix of the iron chelating agent(s) and a suitable powder base such as lactose or starch.
The bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention (can also be formulated in rectal or vaginal compositions such as suppositories or retention enemas, e.g., containing conventional suppository bases such as cocoa butter or other glycerides.
In addition to the formulations described previously, the bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention can also be formulated as a depot preparation. Such long acting formulations may be administered by implantation (for example subcutaneously or intramuscularly) or by intramuscular injection. Thus, for example, the agent(s) of this invention can be formulated with suitable polymeric or hydrophobic materials (for example as an emulsion in an acceptable oil) or ion exchange resins, or as sparingly soluble derivatives, for example, as a sparingly soluble salt.
Other pharmaceutical delivery systems can also be employed. Liposomes and emulsions are well known examples of delivery vehicles that may be used to deliver the bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention. Certain organic solvents such as dimethylsulfoxide also may be employed, although usually at the cost of greater toxicity. Additionally, the bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention can be delivered using a sustained-release system, such as semipermeable matrices of solid polymers containing the therapeutic agent. Various sustained-release materials have been established and are well known by those skilled in the art. Sustained-release capsules may, depending on their chemical nature, can release the active agent(s) for a few days, a few weeks, or up to over 100 days. Depending on the chemical nature and the biological stability of the agent(s) additional strategies for stabilization can be employed.
As the bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention may contain charged side chains or termini, they can be included in any of the above-described formulations as the free acids or bases or as pharmaceutically acceptable salts. Pharmaceutically acceptable salts are those salts which substantially retain the biological activity of the free bases and which are prepared by reaction with inorganic acids. Pharmaceutical salts tend to be more soluble in aqueous and other protic solvents than are the corresponding free base forms.
B) Effective Dosages.
The antibodies, bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention will generally be used in an amount effective to achieve the intended purpose (e.g., to image a tumor or cancer cell, to inhibit growth and/or proliferation of cancer cells, etc.). In certain preferred embodiments, the antibodies, bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties utilized in the methods of this invention are administered at a dose that is effective to partially or fully inhibit cancer cell proliferation and/or growth, or to enable visualization of a cancer cell or tumor characterized by overexpression of an EGFR family protein. In certain embodiments, dosages are selected that inhibit cancer cell growth and/or proliferation at the 90%, more preferably at the 95%, and most preferably at the 98% or 99% confidence level. Preferred effective amounts are those that reduce or prevent tumor growth or that facilitate cancer cell detection and/or visualization. With respect to inhibitors of cell growth and proliferation, the compounds can also be used prophalactically at the same dose levels.
Typically, the antibodies, bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention, or pharmaceutical compositions thereof, are administered or applied in a therapeutically effective amount. A therapeutically effective amount is an amount effective to reduce or prevent the onset or progression (e.g., growth and/or proliferation) of a cancer cell and/or a tumor. Determination of a therapeutically effective amount is well within the capabilities of those skilled in the art, especially in light of the detailed disclosure provided herein.
For systemic administration, a therapeutically effective dose can be estimated initially from in vitro assays. For example, a dose can be formulated in animal models to achieve a circulating concentration range that includes the IC50 as determined in cell culture. Such information can be used to more accurately determine useful doses in humans.
Initial dosages can also be estimated from in vivo data, e.g., animal models, using techniques that are well known in the art. One skilled in the art could readily optimize administration to humans based on animal data.
Dosage amount and interval can be adjusted individually to provide plasma levels of the inhibitors which are sufficient to maintain therapeutic effect.
Dosages for typical therapeutics are known to those of skill in the art. Moreover, such dosages are typically advisorial in nature and may be adjusted depending on the particular therapeutic context, patient tolerance, etc. Single or multiple administrations of the compositions may be administered depending on the dosage and frequency as required and tolerated by the patient.
In certain embodiments, an initial dosage of about 1 μg, preferably from about 1 mg to about 1000 mg per kilogram daily will be effective. A daily dose range of about 5 to about 75 mg is preferred. The dosages, however, can be varied depending upon the requirements of the patient, the severity of the condition being treated, and the compound being employed. Determination of the proper dosage for a particular situation is within the skill of the art. Generally, treatment is initiated with smaller dosages that are less than the optimum dose of the compound. Thereafter, the dosage is increased by small increments until the optimum effect under the circumstance is reached. For convenience, the total daily dosage can be divided and administered in portions during the day if desired. Typical dosages will be from about 0.1 to about 500 mg/kg, and ideally about 25 to about 250 mg/kg.
In cases of local administration or selective uptake, the effective local concentration of the bispecific antibodies and/or chimeric molecules may not be related to plasma concentration. One skilled in the art will be able to optimize therapeutically effective local dosages without undue experimentation. The amount of antibody and/or chimeric moiety will, of course, be dependent on the subject being treated, on the subject's weight, the severity of the affliction, the manner of administration and the judgment of the prescribing physician.
The therapy can be repeated intermittently. In certain embodiments, the pharmaceutical preparation comprising the bispecific antibody molecules cam be administered at appropriate intervals, for example, at least twice a day or more until the pathological symptoms are reduced or alleviated, after which the dosage may be reduced to a maintenance level. The appropriate interval in a particular case would normally depend on the condition of the patient. The therapy can be provided alone or in combination with other drugs, and/or radiotherapy, and/or surgical procedures.
C) Toxicity.
Preferably, a therapeutically effective dose of antibodies, bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention described herein will provide therapeutic benefit without causing substantial toxicity.
Toxicity of the agents described herein can be determined by standard pharmaceutical procedures in cell cultures or experimental animals, e.g., by determining the LD50 (the dose lethal to 50% of the population) or the LD100 (the dose lethal to 100% of the population). The dose ratio between toxic and therapeutic effect is the therapeutic index. Agents that exhibit high therapeutic indices are preferred. Data obtained from cell culture assays and animal studies can be used in formulating a dosage range that is not toxic for use in human. The dosage of the bispecific antibodies, and/or functionalized bispecific antibodies, and/or chimeric moieties of this invention preferably lie within a range of circulating concentrations that include the effective dose with little or no toxicity. The dosage can vary within this range depending upon the dosage form employed and the route of administration utilized. The exact formulation, route of administration and dosage can be chosen by the individual physician in view of the patient's condition (see, e.g., Fingl et al. (1975) In: The Pharmacological Basis of Therapeutics, Ch.1, p. 1).
VI. Kits.
The present invention further encompasses kits for use in detecting cells expressing or overexpressing members of the EGFR protein family in vivo, and/or in biological samples. Kits are also provided for in inhibiting the growth and/or proliferation of cells expressing or overexpressing members of the Epidermal Growth Factor Family (e.g., cancer cells).
In certain embodiments, the kits comprise one or more antibodies, bispecific and/or polyspecific antibodies of this invention. In certain preferred embodiments, the antibodies are bispecific scFv antibodies. Depending on use, the antibodies can be functionalized with linkers and/or chelators for coupling to an effector (e.g., a radioactive moiety, a liposome, a cytotoxin, another antibody, etc.) as described herein.
In certain embodiments, the kits can comprise the molecules of the invention specific for members of the EGFR protein family as well as buffers and other compositions to be used for detection of the bs-scFv antibody molecules.
The kits can also include instructional materials teaching the use of the antibodies for detecting, e.g., cancer cells, and/or teaching the combination of the antibodies with functionalizing reagents or teaching the use of functionalized antibodies for imaging and/or therapeutic applications. In certain embodiments, the antibody is provided functionalized with a linker and/or a chelator (in one container) along with one or more effectors, e.g., cytotoxins, radioactive labels (in a second container) such that the two components can be separately administered (e.g., in pre-targeting approaches) or such that the two components can be administered shortly before use.
Certain instructional materials will provide recommended dosage regimen, counter indications, and the like. While the instructional materials typically comprise written or printed materials they are not limited to such. Any medium capable of storing such instructions and communicating them to an end user is contemplated by this invention. Such media include, but are not limited to electronic storage media (e.g., magnetic discs, tapes, cartridges, chips), optical media (e.g., CD ROM), and the like. Such media may include addresses to internet sites that provide such.
The following examples are offered to illustrate, but not to limit the claimed invention.
Overexpression of EGFR and HER2/neu has been correlated with a poor prognosis in many solid tumors. Antibodies that perturb signaling through these receptors, such as Herceptin7 (anti-HER2) and C225 (anti-EGFR), have demonstrated significant utility in the treatment of cancer. Signal transduction through members of the EGFR family (EGFR, Her-2/neu, Her3 and Her4) is dependent upon the formation of homodimers, heterodimers or heterogenous multimers of these receptors triggered by the binding of ligand. Bispecific scFv antibody molecules that engage multiple epitope pairs of these receptor proteins have been generated as described herein below for use in preventing formation of these signaling complexes in cancerous tumor cells.
Materials and Methods:
The following materials and methods are provided to facilitate the practice of the present invention:
Cloning:
The genes coding for single chain Fv (scFv) antibody molecules specific for the different members of the EGFR family (EGFR, HER2/neu, HER3, HER4) were obtained from Dr. Jim Marks (University of California San Francisco). The scFv genes were isolated from large naïve human scFv libraries. The scFv genes specific for the EGFR proteins were isolated by selection against the extracellular domains of these proteins. All of the scFv genes were provided as inserts in a pUC119myc/his vector, between the NcoI and NotI restriction sites. Sequences for the VH and VL domains of the scFv are provided herein.
Construction of a 20 Amino Acid Linker Molecule.
Proteolytic degradation of the bs-scFv antibody molecules in circulation may limit their effectiveness. Thus, a novel 20 amino acid linker that was devoid of all known proteolytic sites was designed and synthesized. The amino acids employed in the construction of the linker were selected to be primarily neutral (not charged, hydrophobic or hydrophilic) to facilitate efficient transport of the protein into the bacterial periplasmic space. The following two primers were synthesized which encode the new linker molecule: LW583 (5′-AAT TCA GGT GCT GGT ACT TCA GGT TCA GGT GCT TCA GGT GAA GGT TCA GGT TCA A-3′, (SEQ ID NO:278); and LW584 (5′-AGC TTT GAA CCT GAA CCT TCA CCT GAA GCA CCT GAA CCT GAA GTA CCA GCA CCT G-3′, SEQ ID NO:279).
Hybridization of these oligonucleotides formed a “sticky” ends linker with EcoRI and HindIII digested ends. This product was inserted into the pET20b(+) vector previously digested with EcoRI and HindIII. Plasmid DNA was generated from transformed DH5α E. coli using a commercially available kit for DNA plasmid isolation and purification (Qiagen or Gibco BRL Co.) and was subsequently named “pET20b(+)/Linker”. The linker molecule is encoded by the following nucleic acid sequence: 5′-AAT TCA GGT GCT GGT ACT TCA GGT TCA GGT GCT TCA GGT GAA GGT TCA GGT TCA AAG CTA-3′ (SEQ ID NO:280)), and the resulting linker molecule has the following amino acid sequence: NSG AGT SGS GAS GEG SGS KL(SEQ ID NO:281).
Cloning Anti-HER3 Gene into pET20b(+)/Linker Vector.
The gene coding for the anti-HER3 scFv antibody molecule, A5, was amplified from the A5-pUC119myc/his plasmid with the following two primers: LW687 (5′-CGA CCA TGG CCC AGG TGC AGC TGG TGC AG-3′, SEQ ID NO:282); and LW688 (5′-CGA ATT CAC CTA GGA CGG TCA GCT TGG-3′, SEQ ID NO:283).
The amplified product and vector, pET20b(+)/Linker, were both digested with NcoI and EcoRI enzymes, ligated and transformed into competent DH5α E. coli for plasmid DNA production. Selected enzymes directed the A5 gene upstream from the linker. The new plasmid, called “pET20b(+)A5/Linker”, was then isolated and purified.
Cloning Anti HER2/Neu Gene into pET20b(+)A5/Linker Vector.
The gene coding for the anti-HER2/neu scFv antibody molecule, ML3.9, was amplified from the ML3.9-pUC119myc/his plasmid using the following two primers: LW697 (5′-GGG AAG CTT CAG GTG CAG CTG GTG CAG TCT GG-3′, SEQ ID NO:284); and LW698 (5′-GGG CTC GAG ACC TAG GAC GGT CAG CTT GGT TCC-3′, SEQ ID NO:285).
The PCR amplified product and plasmid DNA, pET20b(+)A5/Linker, were digested with HindIII and XhoI restriction enzymes, ligated and transformed into competent DH5α E. coli for production of the new plasmid DNA, pET20b(+)A5/Linker/ML3.9. Selected enzymes directed the ML3.9 gene downstream from the linker sequence. The new plasmid, called ApET20b(+)A5/Linker/ML3.9″, was then isolated and purified.
Cloning of the A5/Linker/ML3.9 Gene into pUC119/Myc/His Vector.
The nucleic acid molecule encoding the bs-scFv product from pET20b(+) was cloned into a pUC119myc/his vector. A (histidine)6 (SEQ ID NO:286) tag and one “stop” codon, which are part of the pET vector, were amplified together with the A5/Linker/ML3.9 nucleic acid construct. PCR amplification was performed using the following two primers: LW687 (5′-CGA CCA TGG CCC AGG TGC AGC TGG TGC AG-3′, SEQ ID NO:287); and LW686 (5′-GAT ATA ATG CGG CCG CTC AGT GGT GGT GGT GGT G-3′, (SEQ ID NO:288).
Digestion of the pUC119myc/his vector and amplified product with NcoI and NotI enzymes was followed by a ligation step and transformation of the DH5α E. coli. The resulting plasmid DNA, called “pUC/ALM”, was then purified and isolated (
B. Transformation of the Expression Clone, TG1.
pUC/ALM was transformed into E. coli strain, TG1, and the clones producing the A5/Linker/ML3.9 bs-scFv antibody molecules were isolated as follows. The bs-scFv molecules were dialyzed overnight, purified by immobilized metal affinity chromatography using Ni-NTA resin (Qiagen), followed by size-exclusion chromatography on an HPLC system using a Superdex-75 column (Pharmacia).
Results:
As a proof of concept, two different bs-scFv antibody molecules were created. The first, named “ALM”, was composed of the A5 scFv and the ML3.9 scFv which specifically binds to both HER3 and HER2/neu, respectively. The second bs-scFv antibody molecule, named “ALF”, was composed of two distinct scFv molecules, A5 and F4, both with a specificity for HER3. Both bs-scFv antibody molecules were cloned and expressed from E. coli.
ALM was evaluated in a series of in vitro and in vivo assays. Its ability to simultaneously bind to both HER3 and HER2/neu, individually and simultaneously, was demonstrated by surface plasmon resonance on a BIAcore instrument (
In vivo, radioiodinated ALM exhibited enhanced specific tumor targeting within 24 hours after administration to immunodeficient mice bearing s.c. human BT-474 tumor xenografts (
These results demonstrate the utility of the bs-scFv antibody molecules of the invention for the treatment of tumor cells that overexpress EGFR proteins. The novel bs-scFv antibody molecules can be used alone or in combination with existing chemotherapeutic methods to treat a variety of cancers including, but not limited to breast, colon, ovarian, endometrial, gastric, pancreatic, prostate and salivary gland cancers.
HER2/neu is a compelling target for combined chemotherapy approaches as it is overexpressed in a variety of tumors and its overexpression has been correlated with a poor prognosis. While HER2/neu lacks a ligand that can trigger signaling through its tyrosine kinase domain, when overexpressed at high concentrations, HER2/neu can spontaneously form homodimers (Yarden and Sliwkowski (2001) Nature Reviews, Molecular Cell Biology 2: 127-137). HER3 is in many ways the opposite of HER2/neu. It actively binds to ligand but lacks a functional tyrosine kinase domain, thus requiring heterodimerization with HER2/neu for signaling. In fact, this combination is believed by many to be the most potent of the signaling complexes formed by the members of the EGFR family (Lohrisch and Piccart (2001) Sem. Oncology (28) Suppl 18: 3-11).
Many chemotherapeutic agents lead to damage that in a normal cell will trigger apoptosis. However, some tumor cells have aberrant signaling that interferes with the normal apoptosis signaling pathway. The phosphorylation of AKT2 in HER2/neu overexpressing tumor cells leads to an anti-apoptotic cascade that could interfere with the antitumor effects of chemotherapeutic or biological agents (Zhou et al. (2000) J. Biol. Chem., 275: 8027-8031). Thus, targeting HER2/neu with bs-scFv antibody molecules in combination with existing chemotherapeutic treatments will be more effective in killing the tumor cells than chemotherapy alone.
An in vivo study was conducted to evaluate the efficacy of 211At labeled bispecific scFv against tumors. The bispecific antibody as labeled using 211At-SAPS chelate (N-(4-[211At] astatophenethyl) succinamate) (see, e.g.,
Four days before injection of BT474 breast cancer cells, mice were implanted with a β-estradiol tablet. On day zero, the mice were injected with 5×106 BT474 breast cancer cells. On day 14, the first therapeutic dose of 211AT conjugated bispecific antibody (ALM) was administered i.p. at a high dose of 80 μg and at a low dose of 10 μg. Subsequent therapeutic doses were administered on day 16 and on day 18. Tumor volume was then tracked as shown in
Tumor volume was generally lower in the treated animals (
This should illustrates the efficacy of the bispecific antibodies of this invention for the detection of cancer.
It is understood that the examples and embodiments described herein are for illustrative purposes only and that various modifications or changes in light thereof will be suggested to persons skilled in the art and are to be included within the purview of this application and the scope of the appended claims. All publications, patents, and patent applications cited herein and accompanying appendices are hereby incorporated by reference in their entirety for all purposes.
Marks, James D., Weiner, Louis M., Adams, Gregory P., Horak, Eva M.
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